PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880470
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 509aa    MW: 55905.8 Da    PI: 7.8685
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880470genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR27.28.1e-0933591441
        TCR 14 lkkYCeCfaagkkCseeCkCedCkNkee 41
               l++YCeCfa+g++C+  C+C++C+N+ +
  462880470 33 LQMYCECFASGAYCDG-CNCTNCFNNPD 59
               689*************.********986 PP
2TCR40.17.5e-13104135132
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCk 32 
                k++kgC+Ckks ClkkYCeCf+a+  Cs++C+
  462880470 104 KHNKGCHCKKSGCLKKYCECFQANILCSDNCN 135
                589**************************997 PP
3TCR521.4e-16141180140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                +++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  462880470 141 RHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 180
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163430.46623181IPR005172CRC domain
SMARTSM011140.0023360IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-53357IPR005172CRC domain
SMARTSM011146.4E-11104139IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-9107135IPR005172CRC domain
SMARTSM011145.7E-20141182IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.5E-13144179IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSEETRVASV AGKALRRERW HPNEEEMLQL QELQMYCECF ASGAYCDGCN CTNCFNNPDN  60
DAARREAIDA TLERNPDAFR PKIGSSPHAN RNNEASGDLP LVGKHNKGCH CKKSGCLKKY  120
CECFQANILC SDNCNTPLQI RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE  180
GSEERKALFQ GDHKNAIHMQ QAANAAVNGA IGVTGFPSPS TSRKRKHIDP SVDHSVKEHV  240
ANRNYHLPQK NAVTDGSLPT NQSVHPPTLG PFKVTYRPLL ADIVQAEDIK ELCKLLVVVS  300
GEAAKAHAGQ KTQEEKAAKK EDDRAGCQTS TNHDRIENIP DRGQKTSISG RTSGGTHTDK  360
ALEEESRHNC ADDKKSDRPM SPGTLALMCD EQDTMFTTSQ NAGSQETVAI NQNRSALYAE  420
QERCVLTEFR DCLRKLVTCG RMKEERYSMG IKSEASGHLG QVNGVSRVPY SKVAVPAVVK  480
TFPQSSSSQP VAGNPVTGPL DKNLKPDNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-213319022132Protein lin-54 homolog
5fd3_B8e-213319022132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T8IK130.0A0A2T8IK13_9POAL; Uncharacterized protein
STRINGSi000730m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-99Tesmin/TSO1-like CXC domain-containing protein