PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880380
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 161aa    MW: 17078.2 Da    PI: 9.3143
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880380genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.52.6e-2856143186
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+kv tpsdv+++  lv+pk++ae++         + ++  l++ed  g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++  
  462880380  56 FDKVVTPSDVGNR--LVIPKQYAEKYfpldaaA--NDKGLLLSFEDAGGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKHLVAGDTVSFYRGA 143
                89*********75..9***********999643..346779************************************************543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-3951144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2852142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.66154156IPR003340B3 DNA binding domain
CDDcd100173.62E-2754141No hitNo description
PfamPF023623.2E-2556146IPR003340B3 DNA binding domain
SMARTSM010191.2E-2156156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MADASLTSSM ALSSGDGAGA LGSGGASASA SSMALSSGDG AGLLGKGMDP EKEHMFDKVV  60
TPSDVGNRLV IPKQYAEKYF PLDAAANDKG LLLSFEDAGG KQWRFRYSYW NSSQSYVMTK  120
GWSRFVKEKH LVAGDTVSFY RGAGRARPPL HRLEAPPPNT P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-5051144398B3 domain-containing transcription factor NGA1
5os9_B3e-5051144398B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884011e-119BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794708.11e-53B3 domain-containing protein Os02g0683500-like
SwissprotQ7F9W21e-54Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A1E5UIE32e-52A0A1E5UIE3_9POAL; B3 domain-containing protein
TrEMBLA0A3L6TKR22e-52A0A3L6TKR2_PANMI; B3 domain-containing protein
STRINGPavir.J27608.1.p1e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-50B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]