PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462880377 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 564aa MW: 63441.4 Da PI: 10.2587 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 85.9 | 3.4e-27 | 56 | 143 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv+++ lv+pk++ae++ + ++ l++ed g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ 462880377 56 FDKVVTPSDVGNR--LVIPKQYAEKYfpldaaA--NDKGLLLSFEDAGGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKHLVAGDTVSFYRGA 143 89*********75..9***********999643..346779************************************************653 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-39 | 51 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-27 | 52 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.21 | 54 | 157 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.19E-23 | 54 | 141 | No hit | No description |
Pfam | PF02362 | 3.7E-24 | 56 | 145 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-19 | 56 | 150 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 564 aa Download sequence Send to blast |
MADASLTSSM ALSSGDGAGA LGSGGASASA SSMALSSGDG AGLLGKGMDP EKEHMFDKVV 60 TPSDVGNRLV IPKQYAEKYF PLDAAANDKG LLLSFEDAGG KQWRFRYSYW NSSQSYVMTK 120 GWSRFVKEKH LVAGDTVSFY RGAGEDARDR LFIDWKHHHR LGHGLDFRKV NAAAPARQVL 180 LSGSAVRLPG LTPPGPPLTA ASAKRLRLFG IEVDNYGESS HDPNELWLRM QRWQTPSDEY 240 SFHFDSPTSS PERVRLRQER NQILNHGSAS TDGHGKAAER WSAKRIAPRR FSKLEAWTQD 300 QQSDMFELTK VSKRQRIASN QLCDIAPWGK LKKYLIAIKF IAIMKAGVKI YQVRKQNWNH 360 VSASTSQFGK EAEILPAKRG FFGPEMWQGA KHLLENDLSE LTEVVKIPRL LASKQFRNIT 420 PREKLKKCLN AVKFVIRIQG SYTRPLLDPW RKFKFCLDVV KFVVRMKAGV RGHQRQKHYS 480 THGTSATDEL ATPKGIGLEA FCEPEAWSRD VETDGYEVTK VARRERLLKN VQSPTFNKPM 540 CPCFDAASNC RDLRFLKYDF LYKI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-51 | 51 | 162 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-51 | 51 | 162 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462880377 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT088401 | 1e-125 | BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01030.1 | 1e-51 | B3 family protein |