PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CAMTA | ||||||||
Protein Properties | Length: 1030aa MW: 114575 Da PI: 6.7764 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.1 | 4e-54 | 12 | 127 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwl++ e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqrrc+w+ 462880353 12 EEaRTRWLRPAEVYYILHNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRRCFWM 111 5569************************************************************************************************ PP CG-1 102 Leeelekivlvhylev 117 Le ++e+ivlv+y+ v 462880353 112 LEPAYEHIVLVQYRGV 127 *************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 78.396 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.7E-68 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.4E-46 | 13 | 125 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 1.2E-4 | 453 | 520 | IPR002909 | IPT domain |
CDD | cd00204 | 1.49E-6 | 484 | 564 | No hit | No description |
SuperFamily | SSF48403 | 2.9E-30 | 484 | 605 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 19.306 | 510 | 764 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.4E-29 | 515 | 605 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.1E-6 | 531 | 603 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.04E-17 | 538 | 764 | No hit | No description |
PROSITE profile | PS50088 | 11.354 | 543 | 575 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.4E-4 | 543 | 572 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2800 | 582 | 611 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 2.9E-30 | 682 | 766 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.7E-6 | 692 | 765 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.4E-29 | 695 | 767 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.354 | 705 | 737 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.4E-4 | 705 | 734 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2800 | 744 | 773 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 27 | 825 | 847 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.529 | 826 | 855 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.98E-6 | 866 | 931 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.638 | 884 | 913 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 37 | 885 | 905 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.088 | 886 | 904 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-6 | 906 | 928 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.64 | 907 | 935 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.4E-5 | 908 | 928 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1030 aa Download sequence Send to blast |
MSQSFDINVL REEARTRWLR PAEVYYILHN HERFPITPEP PKKPPSGSLF LYNRRVNRYF 60 RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV 120 LVQYRGVAEG RNYSPQPSNV PSESLSSLSY PNAIYGNQYR NSASGISEGS ESHQSYSNLS 180 SLTEVTSYSV NKEGNGDGGT LLSIPELGHT FPEQYTEVYR ADNGNTANKS GLNVALKKIV 240 EQLSLGDDDE DDYIYSNHAQ LSGYAKNVEA AGDNQLKQIR TEGIQNGLDR NIAPSWEDVL 300 HCSSGLPTTS VYQKSLCTLV PSPKYIDNLH FARQSDFQHQ QNLDYQQQGG LDSSDLRIRL 360 SATKRFLLGP EDSIDSPSSN FALRNIGNNG TDTLLAHDGR LAPNSDWKTK TPLAFQCNLQ 420 GSELTELFEH GQFEPYPRAD TRLSLGQKQL FNIREISPEW AFSYEITKII ITGDFVCDPL 480 NSCWAVMFGD SEVPAEIVQP GVLRCHTPLH SSGKLTLCIT SGFEWALSSV LSAGVGINFR 540 DSNGWTALHW AAYFGREKMV ATLLAAGASA TAVTDPTAQD PVGKTAAFLA SERGHMGLAG 600 YLSEVSLTSH LASLTIEESD ISKGSAVVEA QKAVESISRR SAEWNGGTED ELSMKDSLAA 660 VRNAAQAAAR IQNAFRAFSF YNNGFEWALS SVLSAGVGIN FRDSNGWTAL HWAAYFGREK 720 MVATLLAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL AGYLSEVSLT SHLASLTIEE 780 SDISKGSAVV EAQKAVESIS RRSAEWNGGT EDELSMKDSL AAVRNAAQAA ARIQNAFRAF 840 SFRKRQQKTA RLKDEYGMTQ EDIDELAAAQ RSYHQTHASS GQFYDKAAVS IQKKYKGWKG 900 RKTFLNMRRN AVKIQAHVRG HQVRKKYKTF VSTVSVLEKV ILRWRRKGQG LRGFRAEQPA 960 MIDTEEEEDD DDDEFDDDEA TKIFRRQKVD EALKEAVSRV LSMVDSPEAR MQYRRMLEEF 1020 RQATVRRYFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5le7_A | 1e-12 | 504 | 768 | 79 | 328 | DD_D12_13_D12 |
5le7_B | 1e-12 | 504 | 768 | 79 | 328 | DD_D12_13_D12 |
5le7_C | 1e-12 | 504 | 768 | 79 | 328 | DD_D12_13_D12 |
5le7_D | 1e-12 | 504 | 768 | 79 | 328 | DD_D12_13_D12 |
5ma5_A | 8e-13 | 506 | 768 | 73 | 302 | K11 |
5ma5_C | 8e-13 | 506 | 768 | 73 | 302 | K11 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880353 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975407.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 8e-97 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | K3Y4W1 | 0.0 | K3Y4W1_SETIT; Uncharacterized protein | ||||
STRING | Si009249m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-85 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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