PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880353
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1030aa    MW: 114575 Da    PI: 6.7764
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880353genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.14e-54121273117
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                +e ++rwl++ e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqrrc+w+
  462880353  12 EEaRTRWLRPAEVYYILHNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRRCFWM 111
                5569************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylev 117
                Le ++e+ivlv+y+ v
  462880353 112 LEPAYEHIVLVQYRGV 127
                *************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.3967133IPR005559CG-1 DNA-binding domain
SMARTSM010764.7E-6810128IPR005559CG-1 DNA-binding domain
PfamPF038595.4E-4613125IPR005559CG-1 DNA-binding domain
PfamPF018331.2E-4453520IPR002909IPT domain
CDDcd002041.49E-6484564No hitNo description
SuperFamilySSF484032.9E-30484605IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.306510764IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-29515605IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-6531603IPR020683Ankyrin repeat-containing domain
CDDcd002042.04E-17538764No hitNo description
PROSITE profilePS5008811.354543575IPR002110Ankyrin repeat
SMARTSM002481.4E-4543572IPR002110Ankyrin repeat
SMARTSM002482800582611IPR002110Ankyrin repeat
SuperFamilySSF484032.9E-30682766IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-6692765IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-29695767IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.354705737IPR002110Ankyrin repeat
SMARTSM002481.4E-4705734IPR002110Ankyrin repeat
SMARTSM002482800744773IPR002110Ankyrin repeat
SMARTSM0001527825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529826855IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.98E-6866931IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.638884913IPR000048IQ motif, EF-hand binding site
SMARTSM0001537885905IPR000048IQ motif, EF-hand binding site
PfamPF006120.088886904IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6906928IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64907935IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5908928IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLR PAEVYYILHN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYRGVAEG RNYSPQPSNV PSESLSSLSY PNAIYGNQYR NSASGISEGS ESHQSYSNLS  180
SLTEVTSYSV NKEGNGDGGT LLSIPELGHT FPEQYTEVYR ADNGNTANKS GLNVALKKIV  240
EQLSLGDDDE DDYIYSNHAQ LSGYAKNVEA AGDNQLKQIR TEGIQNGLDR NIAPSWEDVL  300
HCSSGLPTTS VYQKSLCTLV PSPKYIDNLH FARQSDFQHQ QNLDYQQQGG LDSSDLRIRL  360
SATKRFLLGP EDSIDSPSSN FALRNIGNNG TDTLLAHDGR LAPNSDWKTK TPLAFQCNLQ  420
GSELTELFEH GQFEPYPRAD TRLSLGQKQL FNIREISPEW AFSYEITKII ITGDFVCDPL  480
NSCWAVMFGD SEVPAEIVQP GVLRCHTPLH SSGKLTLCIT SGFEWALSSV LSAGVGINFR  540
DSNGWTALHW AAYFGREKMV ATLLAAGASA TAVTDPTAQD PVGKTAAFLA SERGHMGLAG  600
YLSEVSLTSH LASLTIEESD ISKGSAVVEA QKAVESISRR SAEWNGGTED ELSMKDSLAA  660
VRNAAQAAAR IQNAFRAFSF YNNGFEWALS SVLSAGVGIN FRDSNGWTAL HWAAYFGREK  720
MVATLLAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL AGYLSEVSLT SHLASLTIEE  780
SDISKGSAVV EAQKAVESIS RRSAEWNGGT EDELSMKDSL AAVRNAAQAA ARIQNAFRAF  840
SFRKRQQKTA RLKDEYGMTQ EDIDELAAAQ RSYHQTHASS GQFYDKAAVS IQKKYKGWKG  900
RKTFLNMRRN AVKIQAHVRG HQVRKKYKTF VSTVSVLEKV ILRWRRKGQG LRGFRAEQPA  960
MIDTEEEEDD DDDEFDDDEA TKIFRRQKVD EALKEAVSRV LSMVDSPEAR MQYRRMLEEF  1020
RQATVRRYFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5le7_A1e-1250476879328DD_D12_13_D12
5le7_B1e-1250476879328DD_D12_13_D12
5le7_C1e-1250476879328DD_D12_13_D12
5le7_D1e-1250476879328DD_D12_13_D12
5ma5_A8e-1350676873302K11
5ma5_C8e-1350676873302K11
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880353
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975407.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG28e-97CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLK3Y4W10.0K3Y4W1_SETIT; Uncharacterized protein
STRINGSi009249m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-85Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]