PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880350
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 104aa    MW: 11133.8 Da    PI: 7.1865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880350genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-1224754394
               S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
         B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94
               gr+W++++  +++++   l++GW++F+ +ngL+ gD +vF+l+ g  ++++ ++
  462880350 24 GRTWDMRF--TGGRQIQRLEAGWRGFALDNGLRLGDGCVFELIdGAaEGGTVKF 75
               8*******..9999999************************9856667774444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.492183IPR003340B3 DNA binding domain
CDDcd100171.55E-13180No hitNo description
SuperFamilySSF1019362.35E-12267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-111580IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-92475IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MVVPKSLAPF LPPSTVPATL TCCGRTWDMR FTGGRQIQRL EAGWRGFALD NGLRLGDGCV  60
FELIDGAAEG GTVKFRVQVL HGDIPAAIRE KAGGYTSTSP IEID
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142732.12e-51uncharacterized protein LOC100275071
RefseqXP_020400549.12e-51uncharacterized protein LOC100275071 isoform X1
SwissprotQ7XLP45e-43Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0A9HBU53e-54A0A0A9HBU5_ARUDO; Uncharacterized protein
STRINGGRMZM2G126194_P016e-51(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]