![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462880167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 228aa MW: 25184.4 Da PI: 10.3497 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4e-20 | 56 | 118 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+t+t+eql++L+el++ r p+ae+++++++ l +++ ++V++WFqN++a+e++ 462880167 56 RGSRWTPTPEQLRILKELYYGcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 118 568*****************7669*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.4 | 5.6e-37 | 58 | 120 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+ 462880167 58 SRWTPTPEQLRILKELYYgCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 120 8****************999*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.977 | 53 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-6 | 55 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.70E-8 | 56 | 120 | No hit | No description |
Pfam | PF00046 | 6.6E-18 | 56 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.34E-12 | 56 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-7 | 58 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MQQQQQQKQV SAGEGMAANV GGRSGVSVCR PSGSRWTPTP EQLRILKELY YGCGVRGSRW 60 TPTPEQLRIL KELYYGCGVR SPTAEQIQRI TAMLRQHGKI EGKNVFYWFQ NHKARERQKK 120 RLTSLDVNAT PAGAADINHL GVFSLSPSSG TTSPSSTMGM YTGNGGTSAM QLDTSSHWAD 180 NTAMTTEGSC FLQVIVGLSN TLTRLHGREE HGRRHRRRDV AVGMDLVF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462880167 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM234745 | 9e-92 | AM234745.1 Zea mays mRNA for WUS2 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680535.1 | 4e-73 | WUSCHEL-related homeobox 1B | ||||
Swissprot | Q7XM13 | 1e-43 | WOX1_ORYSJ; WUSCHEL-related homeobox 1 | ||||
TrEMBL | K3ZCE4 | 9e-72 | K3ZCE4_SETIT; Uncharacterized protein | ||||
STRING | Si024219m | 1e-72 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12465 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 6e-35 | WOX family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|