PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880105
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 809aa    MW: 89456.2 Da    PI: 6.636
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880105genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.51.7e-24353400755
    G2-like   7 tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                + eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  462880105 353 SLELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 400
                569************.********************************8 PP
2Response_reg76.21.2e-25221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + + +  Ga 
     462880105  22 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKLLREHRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKGITHGAC 116
                   799********************.****************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
     462880105 117 DYLIKPVRIEELRN 130
                   ************97 PP
3Response_reg76.21.2e-252333411109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + + +  Ga 
     462880105 233 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKLLREHRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKGITHGAC 327
                   799********************.****************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
     462880105 328 DYLIKPVRIEELRN 341
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-4019152No hitNo description
SuperFamilySSF521724.27E-3519147IPR011006CheY-like superfamily
SMARTSM004487.4E-3020132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.46121136IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-2322131IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.27E-2423135No hitNo description
Gene3DG3DSA:3.40.50.23004.6E-40230355No hitNo description
SuperFamilySSF521724.13E-35230379IPR011006CheY-like superfamily
SMARTSM004487.4E-30231343IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.461232347IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-23233342IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.27E-24234346No hitNo description
TIGRFAMsTIGR015572.2E-21355400IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-24356405IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MEERKEVVMG RERDQFPVGM RVLAVDDDPV CLKVLETLLR RCQYHVTTTN QAITALKLLR  60
EHRDMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKSVMKG ITHGACDYLI  120
KPVRIEELRN IWQHVVRRKF SSRERANLDI YKEPPSADSC HGQNQIISRL SDQSGRISKK  180
RKELHSEEED DGVTASIGSF LGLEISGGAA RMEERKEVVM GRERDQFPVG MRVLAVDDDP  240
VCLKVLETLL RRCQYHVTTT NQAITALKLL REHRDMFDLV ISDVHMPDMD GFKLLELVGL  300
EMDLPVIMLS VNGETKSVMK GITHGACDYL IKPVRIEELR NIWQHVVRRK FSSLELHRKF  360
VAAVNQLGID KAVPKRILEL MNVEKLTREN VASHLQKYRL YLKRLSAVAS QQASIVAAFG  420
GRDPSFLHMG AFEGLQSYQH FAPSALPSFD PHGLLSRSGA ATFGVHDLAS AKIVQDVTNN  480
GILGHCAGDA NKFQLVSLQE NQANLAQGST ASLGLPQLQQ KWVHQENNDL STVFSGSALI  540
NTMSDTLQRV TSTPLPQQEL LECTQAKITV QASLRMPSLS SELVERTVGV SGTLQNSSMS  600
QQGALPINDG FSADPFDSTS AAKLDTIFVP SQSEIDQTGK FLVGMPVCAS DSLPATNNSK  660
CAASCSGSTM LLPPDTRRHS NYLQFGIASN SRHEMDGMKQ DRLHNQGLSS GSFNHNFGAS  720
MTEQAYATMS SLIPQMKVHT VTSEDKLKQK TIYDLDISKL HGGLNSSSCN FDGLLNSIIK  780
AEKDDISFTD NDLGSIPASI AFCRSSSMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18340406764ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810502.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0A9CW650.0A0A0A9CW65_ARUDO; Two-component response regulator
STRINGPavir.J08270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-86response regulator 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]