PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879958
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 365aa    MW: 41787.9 Da    PI: 7.1557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879958genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-151041801188
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 +++ l +p +f ++hg+  +++  ++l+   g+sW+v+l+   r +++r+ ++ GW +F+ +ngL++gD++ F++++++
  462879958 104 KQNQYLNVPVEFQDAHGYARRRQ--VSLRM-GGKSWTVNLKRgkRARGDRTAFKYGWHQFCVDNGLEVGDTCFFRVIRER 180
                56778999********9997665..66554.89*******7765556666*************************98764 PP
2B346.18.7e-152503261188
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 +++ l +p +f ++hg+  +++  ++l+   g+sW+v+l+   r +++r+ ++ GW +F+ +ngL++gD++ F++++++
  462879958 250 KQNQYLNVPVEFQDAHGYARRRQ--VSLRM-GGKSWTVNLKRgkRARGDRTAFKYGWHQFCVDNGLEVGDTCFFRVIRER 326
                56778999********9997665..66554.89*******7765556666*************************98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-52866IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-2488179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1689179IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-1291181No hitNo description
SMARTSM010190.001692186IPR003340B3 DNA binding domain
PROSITE profilePS5086311.77394192IPR003340B3 DNA binding domain
PfamPF023627.7E-12105180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-24234325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16235325IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-12237327No hitNo description
SMARTSM010190.0016238332IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773240338IPR003340B3 DNA binding domain
PfamPF023627.7E-12251326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEQGMADLRL GDFEFFKILL PGMSKNKLFA RTYELREGHL LVFRYDTGDV LNVTVFDPST  60
CRKHYPLHAA GGGAGGAGAG KCLPHINEPS HFAVTLRKCN LGAKQNQYLN VPVEFQDAHG  120
YARRRQVSLR MGGKSWTVNL KRGKRARGDR TAFKYGWHQF CVDNGLEVGD TCFFRVIRER  180
SGIKEEDAED EQWEWEEEEE DDEHVLKVEV RKKDGAFRDN GAAGAGKSLP HINEPSHFAV  240
TLRKCNLGAK QNQYLNVPVE FQDAHGYARR RQVSLRMGGK SWTVNLKRGK RARGDRTAFK  300
YGWHQFCVDN GLEVGDTCFF RVIRERSGIK EEDAEDEQWE WEEEEEDDEH VLKVEVRKKD  360
GAFVA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.12e-76B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.12e-76B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-60Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID02e-87A0A0A9SID0_ARUDO; Uncharacterized protein
STRINGPavir.Ia04671.1.p9e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]