PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879812

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7510.87 Da PI: 10.7484

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879812	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.5	6.5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g+lKKA+EL vLCda++ viif +gk+yeyss 462879812 9 KKIENPTNRQVTFSKRRMGLLKKANELAVLCDAQIGVIIFFGSGKMYEYSS 59 78***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.66	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-26	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.00E-34	2	60	No hit	No description
PRINTS	PR00404	2.7E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MGHGRVELKK IENPTNRQVT FSKRRMGLLK KANELAVLCD AQIGVIIFFG SGKMYEYSSP 60 PWRLKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	9e-18	1	61	1	61	MEF2 CHIMERA
6byy_B	9e-18	1	61	1	61	MEF2 CHIMERA
6byy_C	9e-18	1	61	1	61	MEF2 CHIMERA
6byy_D	9e-18	1	61	1	61	MEF2 CHIMERA
6bz1_A	9e-18	1	61	1	61	MEF2 CHIMERA
6bz1_B	9e-18	1	61	1	61	MEF2 CHIMERA
6bz1_C	9e-18	1	61	1	61	MEF2 CHIMERA
6bz1_D	9e-18	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879812

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL731610	6e-56	AL731610.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence.
GenBank	AP014960	6e-56	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	AY177698	6e-56	AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.
GenBank	CP012612	6e-56	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020400356.1	1e-38	MADS-box transcription factor 31
Swissprot	Q84NC2	6e-39	MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBL	I1PPV4	2e-36	I1PPV4_ORYGL; Uncharacterized protein
STRING	OS04T0614100-00	3e-37	(Oryza sativa)
STRING	ORGLA04G0222300.1	3e-37	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-26	MIKC_MADS family protein

Publications ? help Back to Top
Schilling S, et al. Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa). Plant J., 2015. 84(6): p. 1059-72 [PMID:26473514]