PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 66aa MW: 7510.87 Da PI: 10.7484 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g+lKKA+EL vLCda++ viif +gk+yeyss 462879812 9 KKIENPTNRQVTFSKRRMGLLKKANELAVLCDAQIGVIIFFGSGKMYEYSS 59 78***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.66 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-26 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.00E-34 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 2.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MGHGRVELKK IENPTNRQVT FSKRRMGLLK KANELAVLCD AQIGVIIFFG SGKMYEYSSP 60 PWRLKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 9e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879812 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731610 | 6e-56 | AL731610.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence. | |||
GenBank | AP014960 | 6e-56 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY177698 | 6e-56 | AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds. | |||
GenBank | CP012612 | 6e-56 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400356.1 | 1e-38 | MADS-box transcription factor 31 | ||||
Swissprot | Q84NC2 | 6e-39 | MAD31_ORYSJ; MADS-box transcription factor 31 | ||||
TrEMBL | I1PPV4 | 2e-36 | I1PPV4_ORYGL; Uncharacterized protein | ||||
STRING | OS04T0614100-00 | 3e-37 | (Oryza sativa) | ||||
STRING | ORGLA04G0222300.1 | 3e-37 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-26 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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