PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 66aa    MW: 7510.87 Da    PI: 10.7484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879812genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.5e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien +nrqvtfskRr g+lKKA+EL vLCda++ viif  +gk+yeyss
  462879812  9 KKIENPTNRQVTFSKRRMGLLKKANELAVLCDAQIGVIIFFGSGKMYEYSS 59
               78***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.66161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26261IPR002100Transcription factor, MADS-box
CDDcd002654.00E-34260No hitNo description
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MGHGRVELKK IENPTNRQVT FSKRRMGLLK KANELAVLCD AQIGVIIFFG SGKMYEYSSP  60
PWRLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-18161161MEF2 CHIMERA
6byy_B9e-18161161MEF2 CHIMERA
6byy_C9e-18161161MEF2 CHIMERA
6byy_D9e-18161161MEF2 CHIMERA
6bz1_A9e-18161161MEF2 CHIMERA
6bz1_B9e-18161161MEF2 CHIMERA
6bz1_C9e-18161161MEF2 CHIMERA
6bz1_D9e-18161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316106e-56AL731610.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence.
GenBankAP0149606e-56AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY1776986e-56AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.
GenBankCP0126126e-56CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400356.11e-38MADS-box transcription factor 31
SwissprotQ84NC26e-39MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLI1PPV42e-36I1PPV4_ORYGL; Uncharacterized protein
STRINGOS04T0614100-003e-37(Oryza sativa)
STRINGORGLA04G0222300.13e-37(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-26MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]