PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 106aa MW: 11630 Da PI: 12.1737 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 16 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + +r r +lg+f+tae+Aa+a+++a+++l+ge 462879788 16 RFVGVRQRP-SGRWVAEIKDsV----QRVRLWLGTFDTAEDAARAYDEAARALRGE 66 689******.7*********44....36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-29 | 16 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 16 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.284 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 16 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 17 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-8 | 17 | 28 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-26 | 17 | 74 | No hit | No description |
PRINTS | PR00367 | 2.0E-8 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MESGRTATVA AARARRFVGV RQRPSGRWVA EIKDSVQRVR LWLGTFDTAE DAARAYDEAA 60 RALRGENTRT NFADRCRHGH GAASRARLSK NLQHVIARAA AAGRAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 16 | 81 | 14 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879788 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239429.1 | 2e-43 | dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q6J9S1 | 3e-29 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A023INB1 | 1e-44 | A0A023INB1_HORVV; RAPT-4 | ||||
STRING | Si032213m | 3e-42 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-17 | related to AP2 11 |
Publications ? help Back to Top | |||
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