PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 468aa MW: 50617.5 Da PI: 9.0931 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.9 | 5.2e-42 | 176 | 252 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls++k+yhr+h+vCe+hsk+p+v+v gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ 462879464 176 CQVEGCKVDLSSVKDYHRKHRVCEAHSKTPKVIVGGLERRFCQQCSRFHALSEFDQKKRSCRRRLNDHNARRRKPQP 252 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 169 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.565 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.32E-40 | 175 | 255 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.4E-32 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MSSFGMDWNQ KGSVLWDWEN SPPIGANANE NLKILPQAEP KFAGHESVHS SCGTFSSSSE 60 MGYCSSKSSI ASIDSSPKVG DNRELNFAPV KAPDKKTGKK ADLGKVDTAR SSPSSVIAVS 120 SGEPVIGLKL GKRTYFEDVC GGQSVKSSPL DTSAVAPPAP PCKKAKVAQN AQNSYCQVEG 180 CKVDLSSVKD YHRKHRVCEA HSKTPKVIVG GLERRFCQQC SRFHALSEFD QKKRSCRRRL 240 NDHNARRRKP QPEPISYGAS RLSAMFYDAR EQKSFLLGQS PYDQMRSCAN YPWDNAVGGF 300 KFAETKAPWL KPTRAVGADG INLSSQQVWN NSTPHGHHDF NGFIAFKGTS AKVLDQGVDA 360 SAVVSNSNGA PDLQRALSLL SNSSADAASG QAIPQLHPSM TTIAGSSNPV MQGSSPGLWQ 420 EGTALDHQAR FQAFDPLNNG SNIAAPHQLH LLKPPSYDSS PSHYDQMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-26 | 176 | 249 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 248 | KKRSCRRRLNDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879464 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826432.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_025826439.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_025826447.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | A2X0Q6 | 1e-173 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-173 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A2T7F1R0 | 0.0 | A0A2T7F1R0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00358.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-41 | squamosa promoter binding protein-like 2 |