PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CAMTA | ||||||||
Protein Properties | Length: 1112aa MW: 124133 Da PI: 6.3356 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.6 | 1.3e-54 | 12 | 127 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwl++ e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqrrc+w+ 462879060 12 EEaRTRWLRPAEVYYILHNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRRCFWM 111 5569************************************************************************************************ PP CG-1 102 Leeelekivlvhylev 117 Le ++e+ivlv+y+ev 462879060 112 LEPAYEHIVLVQYREV 127 **************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 78.918 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.4E-69 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.3E-46 | 13 | 126 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 1.8E-5 | 432 | 513 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 4.9E-5 | 432 | 522 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF48403 | 2.57E-18 | 463 | 507 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-20 | 683 | 851 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.57E-18 | 690 | 853 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.857 | 692 | 784 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.08E-15 | 697 | 852 | No hit | No description |
Pfam | PF12796 | 3.4E-6 | 713 | 785 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.4E-4 | 725 | 754 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.354 | 725 | 757 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2800 | 764 | 793 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2800 | 832 | 861 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 27 | 913 | 935 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.602 | 914 | 943 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 6.11E-6 | 954 | 1019 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.638 | 972 | 1001 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 37 | 973 | 993 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.096 | 974 | 992 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-6 | 994 | 1016 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.64 | 995 | 1023 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.6E-5 | 996 | 1016 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1112 aa Download sequence Send to blast |
MSQSFDINVL REEARTRWLR PAEVYYILHN HERFPITPEP PKKPPSGSLF LYNRRVNRYF 60 RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV 120 LVQYREVAEG RNYSPQPSNV PSESLSSLSY PNAIYGNQYR NSASGISEGS ESHQSYSNLS 180 SLTEVTSYSV NKESNGDGGT LLSIPELGQT FPEQYTEVYR ADNDNTANKS GLNVALKKIV 240 EQLSLGDDDE DDYIYSDHAQ PLGYAKNVEA AGDNQLKQIR PEGIQNGLDR NIAPSWEDVL 300 HCSSGLPTTS VYQSDFQHQQ NLEYQQQGGL DSSDLRIRLS AAKRFLLGPE DSIDSPSSDF 360 VLRNIGNNGT DTLLAHDGRH APNSDWKTKT PLAFQCNLQG SELTELFDHG QFEPYPRADT 420 RLSLGQKQLF NIREISPEWA FSYEITKIII TGDFVCDPLN SCWAVMFGDS EVPAEIVQPG 480 VLRCHTPLHS SGKLTLCITS GNREVCSEVK NFEFRAKPTA CSFTDPAPSS RSLKSNEELL 540 LLAKFTRMLL HSSGKLTLCI TSGNREVCSE VKNFEFRAKP TACSFTDPAP SSRSLKSNEE 600 LLLLAKFTRM LLREDGSSDA SGDDSQSEHC PKLKMNEEHW EQLIHELGLG CKNPVATVDW 660 IMEELLKSKL QQWLSAKLQV SDEVQQCHLS KHDQGIIHLI SALGFEWALS SVLSAGVGIN 720 FRDSNGWTAL HWAAYFGREK MVATLLAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL 780 AGYLSEVSLT SHLASLTIEE SDISKGEKMV ATLLAAGASA TAVTDPTAQD PVGKTAAFLA 840 SERGHMGLAG YLSEVSLTSH LASLTIEESD ISKGSAVVEA QKAVESISRR SAEWNGGTED 900 ELSMKDSLAA VRNAAQAAAR IQNAFRAFSF RKRQQKTARL RDEYGMTQED IDELAAAQRS 960 YHQTHASSGQ FYDKAAVSIQ KKYKGWKGRK TFLNMRRNAV KIQAHVRGHQ VRKKYKTFVS 1020 TVSVLEKVIL RWRRKGQGLR GFRAEQPAMI DTEEEEEEDD EFDDDEATKI FRRQKVDEAL 1080 KEAVSRVLSM VDSPEARMQY RRMLEEFRQA TL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823459.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
TrEMBL | A0A2T7CU33 | 0.0 | A0A2T7CU33_9POAL; Uncharacterized protein | ||||
STRING | Si009249m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 7e-68 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |