PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879060
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1112aa    MW: 124133 Da    PI: 6.3356
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879060genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.61.3e-54121273117
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                +e ++rwl++ e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqrrc+w+
  462879060  12 EEaRTRWLRPAEVYYILHNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRRCFWM 111
                5569************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylev 117
                Le ++e+ivlv+y+ev
  462879060 112 LEPAYEHIVLVQYREV 127
                **************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.9187133IPR005559CG-1 DNA-binding domain
SMARTSM010765.4E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038592.3E-4613126IPR005559CG-1 DNA-binding domain
PfamPF018331.8E-5432513IPR002909IPT domain
Gene3DG3DSA:2.60.40.104.9E-5432522IPR013783Immunoglobulin-like fold
SuperFamilySSF484032.57E-18463507IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-20683851IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.57E-18690853IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.857692784IPR020683Ankyrin repeat-containing domain
CDDcd002041.08E-15697852No hitNo description
PfamPF127963.4E-6713785IPR020683Ankyrin repeat-containing domain
SMARTSM002481.4E-4725754IPR002110Ankyrin repeat
PROSITE profilePS5008811.354725757IPR002110Ankyrin repeat
SMARTSM002482800764793IPR002110Ankyrin repeat
SMARTSM002482800832861IPR002110Ankyrin repeat
SMARTSM0001527913935IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602914943IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.11E-69541019IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.6389721001IPR000048IQ motif, EF-hand binding site
SMARTSM0001537973993IPR000048IQ motif, EF-hand binding site
PfamPF006120.096974992IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-69941016IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.649951023IPR000048IQ motif, EF-hand binding site
PfamPF006121.6E-59961016IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLR PAEVYYILHN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RNYSPQPSNV PSESLSSLSY PNAIYGNQYR NSASGISEGS ESHQSYSNLS  180
SLTEVTSYSV NKESNGDGGT LLSIPELGQT FPEQYTEVYR ADNDNTANKS GLNVALKKIV  240
EQLSLGDDDE DDYIYSDHAQ PLGYAKNVEA AGDNQLKQIR PEGIQNGLDR NIAPSWEDVL  300
HCSSGLPTTS VYQSDFQHQQ NLEYQQQGGL DSSDLRIRLS AAKRFLLGPE DSIDSPSSDF  360
VLRNIGNNGT DTLLAHDGRH APNSDWKTKT PLAFQCNLQG SELTELFDHG QFEPYPRADT  420
RLSLGQKQLF NIREISPEWA FSYEITKIII TGDFVCDPLN SCWAVMFGDS EVPAEIVQPG  480
VLRCHTPLHS SGKLTLCITS GNREVCSEVK NFEFRAKPTA CSFTDPAPSS RSLKSNEELL  540
LLAKFTRMLL HSSGKLTLCI TSGNREVCSE VKNFEFRAKP TACSFTDPAP SSRSLKSNEE  600
LLLLAKFTRM LLREDGSSDA SGDDSQSEHC PKLKMNEEHW EQLIHELGLG CKNPVATVDW  660
IMEELLKSKL QQWLSAKLQV SDEVQQCHLS KHDQGIIHLI SALGFEWALS SVLSAGVGIN  720
FRDSNGWTAL HWAAYFGREK MVATLLAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL  780
AGYLSEVSLT SHLASLTIEE SDISKGEKMV ATLLAAGASA TAVTDPTAQD PVGKTAAFLA  840
SERGHMGLAG YLSEVSLTSH LASLTIEESD ISKGSAVVEA QKAVESISRR SAEWNGGTED  900
ELSMKDSLAA VRNAAQAAAR IQNAFRAFSF RKRQQKTARL RDEYGMTQED IDELAAAQRS  960
YHQTHASSGQ FYDKAAVSIQ KKYKGWKGRK TFLNMRRNAV KIQAHVRGHQ VRKKYKTFVS  1020
TVSVLEKVIL RWRRKGQGLR GFRAEQPAMI DTEEEEEEDD EFDDDEATKI FRRQKVDEAL  1080
KEAVSRVLSM VDSPEARMQY RRMLEEFRQA TL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2T7CU330.0A0A2T7CU33_9POAL; Uncharacterized protein
STRINGSi009249m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.17e-68Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains