PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879016
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 323aa    MW: 35085.7 Da    PI: 5.1613
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879016genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-12209294594
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                + +s+v    ++v+pk+ a    ++   ++  t  + +gr+W++++  +++++   l++GW++F+ +ngL+ gD +vF+l+ g  ++++ ++
  462879016 209 MCKSHVRPPFQVVVPKSLAPFLPSS---TVPAT-LTWRGRTWDMRF--TGGRQIQRLEAGWRGFALDNGLRLGDGCVFELIdGAaEGGTVKF 294
                5566677777777777777544322...22233.33589*******..9999999************************9856667774444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003053.7E-25228IPR00030814-3-3 protein
PfamPF002441.1E-27483IPR02341014-3-3 domain
Gene3DG3DSA:1.20.190.209.7E-31483No hitNo description
SuperFamilySSF484451.96E-28487IPR02341014-3-3 domain
PRINTSPR003053.7E-252955IPR00030814-3-3 protein
PRINTSPR003053.7E-255685IPR00030814-3-3 protein
Gene3DG3DSA:2.40.330.101.8E-14202299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-15202285IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-14203299No hitNo description
PROSITE profilePS5086311.97205302IPR003340B3 DNA binding domain
PfamPF023623.6E-10207294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0019904Molecular Functionprotein domain specific binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MFPQNASNIA KKNLSPAHPV SLGIALNVSV FYHEILDSPD RAIQIAKQAF EDAIPNLHLL  60
DNDSYNNSTV ILQLLGNNLA LWNLTSNMDV EAECTQEGTE TSGTPSDSNM DLDAENTWEC  120
IGKSDAPGNS AECPSHYFVV AVQQCTTRAC GLNLMVMSLL WLSDSNTANP SSRKSSSMAG  180
TKYKAVVSEE TCGERIQPLL GKPYFTCIMC KSHVRPPFQV VVPKSLAPFL PSSTVPATLT  240
WRGRTWDMRF TGGRQIQRLE AGWRGFALDN GLRLGDGCVF ELIDGAAEGG TVKFRVQVLH  300
GDIPAAIREK AGGYTSTSPI EID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o98_A3e-2468816124114-3-3-like protein C
2o98_B3e-2468816124114-3-3-like protein C
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975400.17e-75B3 domain-containing protein Os04g0386900
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-06B3 family protein