PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462878983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 31075.8 Da PI: 8.5908 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.6 | 3.6e-40 | 68 | 128 | 3 | 63 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++alkcprC+s+ntkfCyynnysl qPryfCkaCrryWt+GG+lrnvPvGgg+rknk+sss 462878983 68 DEALKCPRCESSNTKFCYYNNYSLLQPRYFCKACRRYWTQGGSLRNVPVGGGCRKNKRSSS 128 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 60 | 125 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.0E-34 | 69 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.068 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDMKMISNQA SNTAASAHQH QNQDQDQPQH QQADAGMGAP SEEERKIQRQ KQQLAGSGGE 60 SRPRPHLDEA LKCPRCESSN TKFCYYNNYS LLQPRYFCKA CRRYWTQGGS LRNVPVGGGC 120 RKNKRSSSSS STAPPSNSSV RLAPASSMGF PNVLPTFMST SGFEVPHLSL PFVPPLSLSN 180 LAPAPVVAPV AYPTTPLSFM DILRGGLLDN QGNNFYGPTT TGHSNGMEML MPPSFSFDIM 240 QQHRVIGDHH EGAPIRGTIE GGKWLMTQHE VNNGDGGATR SEGGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462878983 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807789.1 | 8e-56 | dof zinc finger protein PBF-like | ||||
Swissprot | O24463 | 2e-50 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A2T7E477 | 2e-55 | A0A2T7E477_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05377.1.p | 3e-56 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-35 | Dof family protein |
Publications ? help Back to Top | |||
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