PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878678
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 464aa    MW: 52181.1 Da    PI: 5.1664
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878678genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind971.9e-30201382102
                   HHHHHHHHHCTG...........................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
  HSF_DNA-bind   2 Flkklyeilede...........................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                   Fl k+ye++ed+                            +++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+  
     462878678  20 FLIKTYEMVEDPatnhvrrrtpawklpsrtaaaaaardpVTNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER-- 114
                   9999999999777777777777777777777777777779****************************************************999.. PP

                   TTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  72 skskekiweFkhksFkkgkkellekikrkks 102
                          weF+++ F +g+++ll++i+r+k 
     462878678 115 -------WEFANEDFIRGHTHLLKNIHRRKP 138
                   .......*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3516136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5116136IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2720136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-134770IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-2956136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-138597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-1398110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEASQSHGGG GGGSSSPPPF LIKTYEMVED PATNHVRRRT PAWKLPSRTA AAAAARDPVT  60
NHVVSWGPGG ASFVVWNPPD FSRDLLPKYF KHNNFSSFIR QLNTYGFRKI DPERWEFANE  120
DFIRGHTHLL KNIHRRKPVH SHSLQNQVNG PLAESERREY EDEINRLKYE KSLLLADLQR  180
QNQQHSGINW QMQLLEDRLM QMEQRQKNIV ASLSDILQRN GVASGTLLET DHFSKKRRVP  240
KIDLCVNDPT IEERQVPFLQ AMDAVTETPS VFPEPFDRME MSLISLEKFI QRASDASGED  300
MFIGSGEPSP CVTLEQMHSA PVETNINLQS STGHAVAESS CYVQSPVLPL PDIDEDAHRT  360
AEADMNSDTT TADTSQDEAT TETGGSHEPT KVNDIFWERF LTETPKFYRA DEAESGRQGE  420
EFKIEPIEAK EDVKIAVDCS FLHHRDKVGQ ITEQMGQLAS AGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-20813617129Heat shock factor protein 1
5d5v_B4e-20813617129Heat shock factor protein 1
5d5v_D4e-20813617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878678
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810280.10.0heat stress transcription factor A-4d-like
RefseqXP_025810281.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB51e-167HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A2T7EB590.0A0A2T7EB59_9POAL; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-71heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]