PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462878264

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 1102aa MW: 120534 Da PI: 6.9361

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462878264	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	50	107	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++p+ +r+++ +++ +++ +q+kvWFqNrR +ek+ 462878264 50 YVRYTPEQVEALERVYSECPKPTSLRRQQIIRECpilsNIEPKQIKVWFQNRRCREKQ 107 6789****************************************************97 PP
2	START	55.8	1.4e-18	198	294	2	97
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d+ W ++++++++l vi +g g+++l++++ 462878264 198 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRTSWYRDCRRVDVLHVIPTGngGTIELIYMQ 294 68999***************************************************.8888888888****************99999998876 PP
3	START	117.4	2e-37	295	443	62	204
HHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEE CS START 62 veellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgilie 155 v+e+l+d+ W ++++++++l vi +g g+++l++++++a+++++ Rdf+++Ry+ l +g++vi+++S++ + p s+++ RaellpSg+li+ 462878264 295 VAEILKDRTSWYRDCRRVDVLHVIPTGngGTIELIYMQTYAPTTMAQpRDFWTLRYTSGLDDGSLVICERSLTKSTGGPCgpnSPNFTRAELLPSGYLIR 394 789999999*******************************999877************************9887788************* PP EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 p+++g+s + +v+hvdl++ +++++lr+l++s + ++k++va++++ + 462878264 395 PCEGGGSMIYVVDHVDLDALSVPEVLRPLYESPKILAQKMTVAAMRHIR 443 ******************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-18	39	107	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.24	44	108	IPR001356	Homeobox domain
SMART	SM00389	5.0E-15	46	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-16	48	110	IPR009057	Homeodomain-like
CDD	cd00086	8.76E-16	49	109	No hit	No description
Pfam	PF00046	1.2E-15	50	107	IPR001356	Homeobox domain
CDD	cd14686	6.76E-6	101	140	No hit	No description
PROSITE profile	PS50848	23.991	188	426	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.8E-22	196	265	IPR023393	START-like domain
SMART	SM00234	7.8E-35	197	445	IPR002913	START domain
SuperFamily	SSF55961	2.33E-9	198	295	No hit	No description
Pfam	PF01852	1.0E-15	198	294	IPR002913	START domain
SuperFamily	SSF55961	3.16E-25	294	446	No hit	No description
Pfam	PF01852	1.6E-34	295	443	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.8E-22	299	417	IPR023393	START-like domain
Pfam	PF08670	3.7E-45	959	1101	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence Send to blast
MTRRASLAAA PPLRLPQARA TSLAMAAAVA SRERRLSPGA GAPQVDTGKY VRYTPEQVEA 60 LERVYSECPK PTSLRRQQII RECPILSNIE PKQIKVWFQN RRCREKQRKE SSRLQTVNRK 120 LSAMNKLLME ENDRLQKQVS RLVNDNGYMR NRLDKPSVAT TDTSCESVVT GGQQHMQHPV 180 VPQSLQRDAN NPAGLLAIAE ETLAEFMSKA TGTAVNWVQM VGMKPGPDSI GIIAVSHNCS 240 GVAARACGLV SLEPTKVAEI LKDRTSWYRD CRRVDVLHVI PTGNGGTIEL IYMQVAEILK 300 DRTSWYRDCR RVDVLHVIPT GNGGTIELIY MQTYAPTTMA QPRDFWTLRY TSGLDDGSLV 360 ICERSLTKST GGPCGPNSPN FTRAELLPSG YLIRPCEGGG SMIYVVDHVD LDALSVPEVL 420 RPLYESPKIL AQKMTVAAMR HIRQIAHESS GEIPYIAGRQ PALFRTFSQR LSRGFNDAVN 480 GFPDDGWSLL SSDGSEDIKI SVNSSANKLV GFHVSSSPFF SAIGVGIMCA KASMLLQDVP 540 PALLVRFLKD HRSQWADPAV DAYSAATLRT NPYAVSGLRN GGFMGNQPIL LAETFDHEES 600 LEIVRSEGQA LSHDEALLSR DMLLLQAMRH IRQIAHESSG EIPYIAGRQP ALFRTFSQRL 660 SRGFNDAVNG FPDDGWSLLS SDGSEDIKIS VNSSANKLVG FHVSSSPFVS AIGVGIMCAK 720 ASMLLQDVPP ALLVRFLKDH RSQWADPAVD AYSAATLRTN PYAVSGLRNG GFMGNQPILL 780 AETFDHEESL EIVRSEGQAL SHDEALLSRD MLLLQLCNGV DENAPGACAQ LVFAPIDESF 840 TDDAPLLPSG FRVIQLDGKA DVPSSTRTLD LASALDVGSG GELRASKDAP GACNVKSVLT 900 IAFQFPFENH LRDSVAAMAR QYVRSVLATV QKVAMVLSSS RPGLQIEMKH PPGSPEAHTL 960 ARWISKSYRA HTGADIRWSD TEDMESPLKL LWKHSDAILC CSLKASPMLM FANSAGLDIL 1020 ETTLINIQDM PLETVLGDEG QKALFLELAK IMQQGFAYLP GGVCKSSMGR QASYEQAVAW 1080 KVVGDDGMPH CLALMLVNWT FI

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence Send to blast

MTRRASLAAA PPLRLPQARA TSLAMAAAVA SRERRLSPGA GAPQVDTGKY VRYTPEQVEA  60
LERVYSECPK PTSLRRQQII RECPILSNIE PKQIKVWFQN RRCREKQRKE SSRLQTVNRK  120
LSAMNKLLME ENDRLQKQVS RLVNDNGYMR NRLDKPSVAT TDTSCESVVT GGQQHMQHPV  180
VPQSLQRDAN NPAGLLAIAE ETLAEFMSKA TGTAVNWVQM VGMKPGPDSI GIIAVSHNCS  240
GVAARACGLV SLEPTKVAEI LKDRTSWYRD CRRVDVLHVI PTGNGGTIEL IYMQVAEILK  300
DRTSWYRDCR RVDVLHVIPT GNGGTIELIY MQTYAPTTMA QPRDFWTLRY TSGLDDGSLV  360
ICERSLTKST GGPCGPNSPN FTRAELLPSG YLIRPCEGGG SMIYVVDHVD LDALSVPEVL  420
RPLYESPKIL AQKMTVAAMR HIRQIAHESS GEIPYIAGRQ PALFRTFSQR LSRGFNDAVN  480
GFPDDGWSLL SSDGSEDIKI SVNSSANKLV GFHVSSSPFF SAIGVGIMCA KASMLLQDVP  540
PALLVRFLKD HRSQWADPAV DAYSAATLRT NPYAVSGLRN GGFMGNQPIL LAETFDHEES  600
LEIVRSEGQA LSHDEALLSR DMLLLQAMRH IRQIAHESSG EIPYIAGRQP ALFRTFSQRL  660
SRGFNDAVNG FPDDGWSLLS SDGSEDIKIS VNSSANKLVG FHVSSSPFVS AIGVGIMCAK  720
ASMLLQDVPP ALLVRFLKDH RSQWADPAVD AYSAATLRTN PYAVSGLRNG GFMGNQPILL  780
AETFDHEESL EIVRSEGQAL SHDEALLSRD MLLLQLCNGV DENAPGACAQ LVFAPIDESF  840
TDDAPLLPSG FRVIQLDGKA DVPSSTRTLD LASALDVGSG GELRASKDAP GACNVKSVLT  900
IAFQFPFENH LRDSVAAMAR QYVRSVLATV QKVAMVLSSS RPGLQIEMKH PPGSPEAHTL  960
ARWISKSYRA HTGADIRWSD TEDMESPLKL LWKHSDAILC CSLKASPMLM FANSAGLDIL  1020
ETTLINIQDM PLETVLGDEG QKALFLELAK IMQQGFAYLP GGVCKSSMGR QASYEQAVAW  1080
KVVGDDGMPH CLALMLVNWT FI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462878264

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963232.1	0.0	homeobox-leucine zipper protein HOX33
Swissprot	A2ZMN9	0.0	HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
Swissprot	Q2QM96	0.0	HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBL	K3Z3T3	0.0	K3Z3T3_SETIT; Uncharacterized protein
STRING	Si021201m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30490.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Luan W, et al. Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice. Sci China Life Sci, 2013. 56(12): p. 1113-23 [PMID:24302292]