PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878259
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 219aa    MW: 24087.4 Da    PI: 8.7102
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878259genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32113169158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF
  462878259 113 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 169
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-35111172IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.652112172IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-27114169IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23115137IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23146169IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTSVVQSVSG DHRAEDQHQQ NKQKQAEPED QQEASVTSSG SQTMVGTPSA DYVAAYAPHD  60
MAHAMNFKGQ FAYPNVDPYY GSLYAAYGGQ PMMHPPLVGM HPTGLPLPTD AIEEPVYVNA  120
KQYNAILRRR QSRAKAESER KLIKGRKPYL HESRHQHALK RARGAGGRFL NSKSDDKDEN  180
SDSSHKEKQN GVVDRNNGQP SSPMSPNGAT SANQADNRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21112176165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963231.11e-133nuclear transcription factor Y subunit A-7
SwissprotQ84JP17e-44NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0A9GEL21e-134A0A0A9GEL2_ARUDO; Uncharacterized protein
STRINGPavir.Ca02834.1.p1e-135(Panicum virgatum)
STRINGPavir.J06031.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-39nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]