PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 80aa MW: 9014.57 Da PI: 10.5908 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92 | 2.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng+lKKA E+SvLCdaev +ifss gkly+++s 462876856 9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGAVIFSSAGKLYDFCS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.983 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.25E-41 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-30 | 2 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVGAVIFSS AGKLYDFCSP 60 KTSYVPYLFP LRFPVPAFLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 6e-19 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
6bz1_B | 6e-19 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
6bz1_C | 6e-19 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
6bz1_D | 6e-19 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876856 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099210 | 2e-72 | FP099210.1 Phyllostachys edulis cDNA clone: bphyem127e18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970811.1 | 2e-37 | MADS-box transcription factor 2 | ||||
Refseq | XP_025816957.1 | 2e-37 | MADS-box transcription factor 2 | ||||
Swissprot | Q40702 | 5e-37 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | K3XMU3 | 4e-37 | K3XMU3_SETIT; Uncharacterized protein | ||||
STRING | Sb03g041860.1 | 1e-37 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-31 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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