PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 334aa MW: 37275 Da PI: 9.3593 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.9e-10 | 49 | 91 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ 462876742 49 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 91 5899*************************86666666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-8 | 46 | 109 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.289 | 48 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-7 | 50 | 91 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-7 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.2E-8 | 52 | 95 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.6E-33 | 132 | 207 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MADASSRTDT STVLDTDDKN QRLENGQSGA AMASNSSDRS DRSDRPMDQK VLRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL 120 EYARWQEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFRQKGVA AKADVFHILS 180 GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTDQQMLG LSNLQQSSQQ AEDALSQGME 240 ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR 300 ILTIRQAARA LLAIHDYFSR LRALSSLWLA RPRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876742 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727805 | 0.0 | KJ727805.1 Zea mays clone pUT5757 bZIP transcription factor (bZIP52) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558037.1 | 0.0 | transcription factor TGA2.2 isoform X1 | ||||
Swissprot | Q6IVC3 | 0.0 | TGA22_ORYSJ; Transcription factor TGA2.2 | ||||
TrEMBL | I1H628 | 0.0 | I1H628_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G64060.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-135 | TGACG motif-binding factor 6 |
Publications ? help Back to Top | |||
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