PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876450
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 276aa    MW: 30372.9 Da    PI: 9.0454
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876450genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.7e-181154346
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
               i n+s r  t+ kRr+g++KKA+EL +LC+++++v+ +++   +
  462876450 11 IANDSTRRATYKKRRKGLMKKASELATLCGVDACVVAYGEGEAM 54
               89*************************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.086161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-20161IPR002100Transcription factor, MADS-box
CDDcd002663.29E-25265No hitNo description
PRINTSPR004047.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MARKKVTLQW IANDSTRRAT YKKRRKGLMK KASELATLCG VDACVVAYGE GEAMPELDQC  60
KKMMDMEGFL RQRIDKLREQ LHKAQRDNRE REATLLLHDT IAGRRPGGLA GLSVEEIASL  120
GWMVENRLQC VNMAIDKLHL QGLPATALQL QPPLPPPIVS GGSSSAAYSF GGELGALVYG  180
GFGGSFNYAS HMPPLGNIGA GFGGTTCVST NQMDMYVHNR SKQEMSDGGY VYGFHLRRGR  240
LVSRMLTSDE KNRACRVGGR EETLAHEYVY LCHGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIANDSTRRATYKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275265e-69KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds.
GenBankKJ7277165e-69KJ727716.1 Zea mays clone pUT5655 MADS transcription factor (MADS64) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954970.13e-83agamous-like MADS-box protein AGL80
TrEMBLK3YYW48e-83K3YYW4_SETIT; Uncharacterized protein
STRINGSi019470m1e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-26AGAMOUS-like 80