PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | YABBY | ||||||||
Protein Properties | Length: 228aa MW: 24331.6 Da PI: 6.867 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 165.7 | 3.3e-51 | 22 | 202 | 6 | 159 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas......qllaaeshldeslkee...................lleelkveee 80 eq+Cyv+Cn+C+tilav vP +slfk+vtvrCGhC++l+svnl q l + ll ++ ++ 462876231 22 EQEQLCYVNCNYCDTILAVGVPCSSLFKTVTVRCGHCANLFSVNLCSLLlpppanQ-------LPFGQAPLlsptsphnlldelsfqapsLLSAEQAASP 114 579******************************************98874444431.......3332222244455556666677777776666666666 PP YABBY 81 nlksnvekeesastsvssekl........senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++++ +++++++s +s++ + +e +++p+ +r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn 462876231 115 TVSVSTITSSNNSCGNSMSAMsiapppkpAPQEPQQLPKSATsGNRTTEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 202 66666666666666666666667999887566677777766558*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.6E-58 | 22 | 202 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.39E-5 | 155 | 200 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 5.07E-4 | 167 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MSSVTETFSM DQHFVQPPPA AEQEQLCYVN CNYCDTILAV GVPCSSLFKT VTVRCGHCAN 60 LFSVNLCSLL LPPPANQLPF GQAPLLSPTS PHNLLDELSF QAPSLLSAEQ AASPTVSVST 120 ITSSNNSCGN SMSAMSIAPP PKPAPQEPQQ LPKSATSGNR TTEKRQRVPS AYNRFIKDEI 180 QRIKASNPDI THREAFSAAA KNDGGECLLF KDGLYAAAAA SGMRIAPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876231 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274017 | 4e-66 | AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds. | |||
GenBank | AK070205 | 4e-66 | AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 1e-102 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 2e-87 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 2e-87 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A0A9NXW5 | 1e-106 | A0A0A9NXW5_ARUDO; ZYB14 | ||||
STRING | Si010859m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-44 | YABBY family protein |
Publications ? help Back to Top | |||
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