PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462875796 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 30741.1 Da PI: 4.6323 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 100 | 147 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + k +r++lg+f+t+e Aa a+++a+ + +g 462875796 100 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 147 9*****.**********32..2.24**********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.298 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-20 | 98 | 156 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 98 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-12 | 99 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-27 | 100 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-29 | 100 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-15 | 100 | 157 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MELEHYTPYS YCYSEAAPAV WPSSPAMATT DGDELRRELD ALALFLDSDD YESSDSFSSP 60 SSATCSEAAM ALPNMGYGQQ QYQEASSTPK KPAPAQSLIG VRKRPWGKFA AEIRDSTRKG 120 ARVWLGTFDT PEAAALAYDQ AAFSARGDAA VLNFPVDRVR ESLGAMALAA GNGSPVLALK 180 KRHSKRTRRR KLISPVISNN NVNQMTTHQL PAPKCSDDAS AVSGATMEVP WQQETAPHQC 240 SDTSAAPPPC QFDCSVNAVE LEDLGADHLD ELLWASSGLE YWDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-24 | 100 | 155 | 17 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462875796 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828658.1 | 6e-54 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2T7CMG4 | 2e-55 | A0A2T7CMG4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01336.1.p | 1e-46 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 5e-33 | ethylene-responsive element binding factor 15 |