PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462875706

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 313aa MW: 34598.4 Da PI: 7.9775

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875706	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56	6.9e-18	32	81	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq 462875706 32 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 81 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-23	29	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.888	30	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-19	30	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-15	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-15	32	85	No hit	No description
SMART	SM00353	5.5E-13	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MLNLRELTVR VETKGGSCSG SAGTDQLPNT PRSKHSATEQ RRRSKINDRF QILREILPQN 60 DQKRDKASFL LEVIEYIRFL QEKVQKYEVS QQEWSQENAK VMPWSNIYFR SVWKNAQNKD 120 EIDGDTTYDP SQVIKNGSSL GFPFAVKPAD CNKAAAFEIA SGGQELAEAN KKGCVSYKEA 180 DTPSNVANNV ASQQEAQLTK SSPTEDCAVN NEILKDPELA IDEGTISLSS QYSQGLLATL 240 NHALQNSGID LTQASISVQI NLGKRAAKRP APGADSTSKD LTSQVPHDQA TRRHLKDGAL 300 EHSQATKRHK SDR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875706

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822755.1	1e-174	transcription factor BIM2-like isoform X2
TrEMBL	A0A3L6PNX7	1e-172	A0A3L6PNX7_PANMI; Transcription factor BIM1-like
TrEMBL	A0A3L6RH25	1e-172	A0A3L6RH25_PANMI; Transcription factor BIM1-like
STRING	Pavir.Fb01833.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-53	BES1-interacting Myc-like protein 2