PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462874681

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 366aa MW: 39640.4 Da PI: 7.0386

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462874681	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H + + 462874681 141 WRCERCGKRYAVHSDWKAHVKGC 163 58*****************9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.4E-4	129	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.11E-5	136	185	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MMLSDLSSDQ EATGSSSHGG DIASCYALSP FFVAPVATAT APPPLPPPPP TQLVEKPRSR 60 GRGDRTVAAD AGDDEPVQPA TAPPRAQPPL EAPPARAAVR RRKRVYVCPE PTCVHHDPAR 120 ALGDLTGIKK HFSRKHGEKR WRCERCGKRY AVHSDWKAHV KGCGTREYRC DCGILFSRKD 180 SLLTHRAFCD ALAEESARLL AAAHNSSTIT NINDSSSNNN LLITNSSTPL FLPFSHPPPA 240 THQNPNSLFF MHQQEAPLLQ QIQHSTYLDL TVDATVSTVT GDSGADTISF GLTPDDSVAL 300 HAGGGNRRLT RDFLGVDDGE VEELQLPLCT TAAAAVPRAA SCATDLTRQY FVERLPPVND 360 TWSHNF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MMLSDLSSDQ EATGSSSHGG DIASCYALSP FFVAPVATAT APPPLPPPPP TQLVEKPRSR  60
GRGDRTVAAD AGDDEPVQPA TAPPRAQPPL EAPPARAAVR RRKRVYVCPE PTCVHHDPAR  120
ALGDLTGIKK HFSRKHGEKR WRCERCGKRY AVHSDWKAHV KGCGTREYRC DCGILFSRKD  180
SLLTHRAFCD ALAEESARLL AAAHNSSTIT NINDSSSNNN LLITNSSTPL FLPFSHPPPA  240
THQNPNSLFF MHQQEAPLLQ QIQHSTYLDL TVDATVSTVT GDSGADTISF GLTPDDSVAL  300
HAGGGNRRLT RDFLGVDDGE VEELQLPLCT TAAAAVPRAA SCATDLTRQY FVERLPPVND  360
TWSHNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-33	137	206	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-33	137	206	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269\|PubMed:18725639, ECO:0000269\|PubMed:18774969, ECO:0000269\|PubMed:18790997, ECO:0000269\|PubMed:24280027, ECO:0000303\|PubMed:19304997}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00673	SELEX	Transfer from GRMZM2G011357	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462874681

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269\|PubMed:25036785, ECO:0000269\|PubMed:25573482, ECO:0000269\|PubMed:25850808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB359196	1e-122	AB359196.1 Oryza sativa Japonica Group Ehd2 mRNA for early heading date 2, complete cds, cultivar: Tohoku IL9.
GenBank	FJ009578	1e-122	FJ009578.1 Oryza sativa Japonica Group cultivar Zhonghua 11 Cys2/His2-type zinc finger transcription factor (RID1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165515.1	1e-122	protein indeterminate-domain 12-like
Swissprot	B1B534	1e-101	EHD2_ORYSJ; Protein EARLY HEADING DATE 2
TrEMBL	N1R3S7	1e-121	N1R3S7_AEGTA; Zinc finger protein MAGPIE
STRING	Traes_6DS_DE865EA6D.1	1e-122	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13096	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.2	1e-50	indeterminate(ID)-domain 4

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Park SJ, et al. Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod. Plant J., 2008. 56(6): p. 1018-29 [PMID:18774969] Song Y,Gao Z,Luan W Interaction between temperature and photoperiod in regulation of flowering time in rice. Sci China Life Sci, 2012. 55(3): p. 241-9 [PMID:22527521] Hu S, et al. A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7. Rice (N Y), 2013. 6(1): p. 24 [PMID:24280027] Cai Y, et al. Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice. PLoS ONE, 2014. 9(7): p. e102529 [PMID:25036785] Yoshitake Y, et al. The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice. Sci Rep, 2015. 5: p. 7709 [PMID:25573482] Han SH,Yoo SC,Lee BD,An G,Paek NC Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod. Plant Cell Environ., 2015. 38(12): p. 2527-40 [PMID:25850808] Jin J, et al. MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice. Plant Physiol., 2015. 168(4): p. 1275-85 [PMID:25855537] Brambilla V,Gomez-Ariza J,Cerise M,Fornara F The Importance of Being on Time: Regulatory Networks Controlling Photoperiodic Flowering in Cereals. Front Plant Sci, 2017. 8: p. 665 [PMID:28491078]