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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462874162 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 415aa MW: 45583 Da PI: 6.1936 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.3 | 6.9e-07 | 177 | 198 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H 462874162 177 FCSICGKGFKRDANLRMHMRGH 198 6*******************98 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 295 | 309 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H 462874162 295 CGTSFSRKDKLFAHV 309 **************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.58E-5 | 174 | 201 | No hit | No description |
SMART | SM00355 | 0.0023 | 176 | 198 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.092 | 176 | 203 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-6 | 177 | 227 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 73 | 225 | 258 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 37 | 263 | 285 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MLDNLTFIEE KIRQVKDVIR TMVDNSGQLP YRPGELAQQQ QAVNADLTCL IVQLISTAGS 60 LLPSLKNSSF LSHPPAGHMD MANHVGSSSS MVPNTTVHSE GINEDLCSPD EYEELFKGFT 120 DGSVEGTEID NVHVEKQDTN DGDEGGDAGM DGDNLPPGSY ELLQLEKDEI LAPHTHFCSI 180 CGKGFKRDAN LRMHMRGHGD EYKSPAALAK PPRDASAEHA PVKRYSCPFI GCKRNKLHKN 240 FQPLKTILCV KNHYKRSHCE KSYTCSRCHT KKFSVMADLK THEKHCGRDK WLCSCGTSFS 300 RKDKLFAHVA LFQGHTPALP SEEPKDSSYQ VGLLGIHQEP AKLGSFMWGN SSGDDSVLDV 360 KGLDSCSDDF LSTANFGSFN FNFGQLDEFV GNPSDGSFAV LASDGFQSAQ KKGEN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462874162 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977257.1 | 0.0 | zinc finger protein STAR3 | ||||
Swissprot | Q943I6 | 1e-143 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A0A9JGB1 | 0.0 | A0A0A9JGB1_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0A9S670 | 0.0 | A0A0A9S670_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J02020.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-133 | C2H2 family protein |
Publications ? help Back to Top | |||
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