PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462874156
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 433aa    MW: 46374.9 Da    PI: 12.0229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462874156genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16142184248
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ta  Aa+a++a
  462874156 142 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAAAAARAYDA 184
                8********.**********7.....337******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-13141174No hitNo description
PfamPF008476.7E-11142184IPR001471AP2/ERF domain
SMARTSM003803.9E-16142191IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15142186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-23142185IPR001471AP2/ERF domain
PROSITE profilePS5103219.559142184IPR001471AP2/ERF domain
PRINTSPR003677.9E-11143154IPR001471AP2/ERF domain
PRINTSPR003677.9E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MCHATVADSG EQHWRRPLAA DDQGGGQLSP GEPVMSSSSP ALSRSRQEEE MSAMVSALAA  60
GGREEPCRLC RGGGGGVVAV RGARRRAAVL GATARRRCRX XGASSPSSSQ SRAAAEELPS  120
PSPSSAGESG GGGGGGAPLR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAAAAAR  180
AYDAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXHRRG SRARLRRRRA PIPRQPRKAQ LPRVSHHPVA ADADAAVSSP AFGGGAGAAV  300
AAGGAAGVAG GAVRGVRQVL AERRRRPVRD RKRVAFSRAT SASAGANCYG TYPPPWRWDQ  360
SAHEDQIWPE REEAGGAALL GRRRGRRRRC AAGKDAGGAR EKERKEAGDA REGTGADASQ  420
GRRTAALCRG ERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-14141183447ATERF1
3gcc_A5e-14141183447ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMap462874156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205272e-42AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478122e-42AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAP0149672e-42AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-17ethylene response factor 110