PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462874156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 433aa MW: 46374.9 Da PI: 12.0229 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 142 | 184 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+ta Aa+a++a 462874156 142 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAAAAARAYDA 184 8********.**********7.....337******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-13 | 141 | 174 | No hit | No description |
Pfam | PF00847 | 6.7E-11 | 142 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-16 | 142 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-15 | 142 | 186 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-23 | 142 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 142 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 143 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 165 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MCHATVADSG EQHWRRPLAA DDQGGGQLSP GEPVMSSSSP ALSRSRQEEE MSAMVSALAA 60 GGREEPCRLC RGGGGGVVAV RGARRRAAVL GATARRRCRX XGASSPSSSQ SRAAAEELPS 120 PSPSSAGESG GGGGGGAPLR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAAAAAR 180 AYDAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXHRRG SRARLRRRRA PIPRQPRKAQ LPRVSHHPVA ADADAAVSSP AFGGGAGAAV 300 AAGGAAGVAG GAVRGVRQVL AERRRRPVRD RKRVAFSRAT SASAGANCYG TYPPPWRWDQ 360 SAHEDQIWPE REEAGGAALL GRRRGRRRRC AAGKDAGGAR EKERKEAGDA REGTGADASQ 420 GRRTAALCRG ERR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-14 | 141 | 183 | 4 | 47 | ATERF1 |
3gcc_A | 5e-14 | 141 | 183 | 4 | 47 | ATERF1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462874156 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120527 | 2e-42 | AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence. | |||
GenBank | AC147812 | 2e-42 | AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence. | |||
GenBank | AP014967 | 2e-42 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-17 | ethylene response factor 110 |