PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873836
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 794aa    MW: 85114.9 Da    PI: 6.3196
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873836genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21e-21199254156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r++ +++t+eq+ ++e++F+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  462873836 199 RKSYHRHTAEQIGVMEAMFKESPHPDEKQRQQLSKQLGLSPRQVKFWFQNRRTQIK 254
                788999**********************************************9877 PP
2START138.85.5e-4440054969206
                GGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEE CS
      START  69 keqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliep 156
                  qW+e ++    +a+tl v+++g      g++qlm+aelq+l+ +vp R++ f+Ry+++lga++w++vd Svd  ++  + ss v ++ + pSg++ie+
  462873836 400 VNQWKELFPsmvsSASTLSVVQTGedgdqdGVVQLMFAELQMLTSVVPtREVCFLRYCKKLGAEKWAVVDASVDKAEPDAQtSSTVGKCLKKPSGCIIEE 499
                3499999999999***************************************************************9999999***************** PP

                ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  ngh+kvtwveh+ ++   +++++r    sgla+ga++wva+lq qce+
  462873836 500 QTNGHCKVTWVEHTTCRNVNVPSMYRAATASGLAFGARRWVAALQLQCER 549
                ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-21179257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-23184250IPR009057Homeodomain-like
PROSITE profilePS5007117.961196256IPR001356Homeobox domain
SMARTSM003899.1E-20198260IPR001356Homeobox domain
CDDcd000863.87E-19199254No hitNo description
PfamPF000463.6E-19199254IPR001356Homeobox domain
PROSITE patternPS000270231254IPR017970Homeobox, conserved site
PROSITE profilePS5084830.901348552IPR002913START domain
SuperFamilySSF559611.37E-23350549No hitNo description
CDDcd088756.69E-81352548No hitNo description
SMARTSM002342.2E-34357549IPR002913START domain
PfamPF018525.6E-36400549IPR002913START domain
Gene3DG3DSA:3.30.530.202.7E-5429532IPR023393START-like domain
SuperFamilySSF559611.65E-8571761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDAVAEAGGE AGTQHQAVAE ASTSSAAVPF DRSSSRLGVP GAESFDGALR ELKDLRFQLN  60
EAADCCEKAF LNTEKKKLIM ESTKSYICDA VVAVIDHLGT VSSKLEHKME EKTEITQMEQ  120
KLNFLKQAGA FAGNAPAEAD GDEVEEGDDE SGGAIVRGDL RLGDAADISS ENTGPPGSPS  180
GGGSGDEGGH GDGGDQKRRK SYHRHTAEQI GVMEAMFKES PHPDEKQRQQ LSKQLGLSPR  240
QVKFWFQNRR TQIKAIQERQ ENSLLKSELE KLQEENRAIR ELIKKPSHCP SCGVAAATDE  300
HLLRLENARL KTEIERLRAS TRGGRGADAV ASTNSSSSLH DYVAGGLVGH DKARVLELAG  360
RALDELKTMC SAGEPLWVRS VETGRDVLNY DEYVRLFGRV NQWKELFPSM VSSASTLSVV  420
QTGEDGDQDG VVQLMFAELQ MLTSVVPTRE VCFLRYCKKL GAEKWAVVDA SVDKAEPDAQ  480
TSSTVGKCLK KPSGCIIEEQ TNGHCKVTWV EHTTCRNVNV PSMYRAATAS GLAFGARRWV  540
AALQLQCERR VFSVATNIPT RDSNGVATMA GRRSVLKLAH RMTSSLCRGI GASRGTTWSK  600
APNGGGGGEP QGMIACAVLS TWLPVSPTVL LDLLRDETRR HEWDVMLPGG SVQSCANVTK  660
GKDRGNCVTI YAAKSSAAEQ DGKWILQDSC VGPCESIVAY ARVDAATLRP VVDGHDSSGV  720
AVLPCGFAVT PDGLDSKPAV ITSSKDVDRA AGSLVTVVFQ VLATASPTDS VATVTGMVAC  780
TLGNVKRALR CEDC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701492.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A1E5VBC30.0A0A1E5VBC3_9POAL; Homeobox-leucine zipper protein ROC9
STRINGSi004904m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein