PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873395
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 232aa    MW: 26509.4 Da    PI: 6.6514
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873395genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.54.7e-21180229151
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                k+r++W  +LH+ Fve+v++L G++k +Pk+i+e m+v+g+t++hv+SHLQ
  462873395 180 KQRVQWFGQLHRIFVEVVHRL-GIDKVVPKKIVEEMNVEGITRDHVASHLQ 229
                79*******************.***************************** PP
2Response_reg74.83.1e-25121221108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                   vl vdD+ + ++l+++ l++ +y +v+++ +++ ale+l++++     +Dl+++D+ mp+md+++ll+ i  e  ++p+i+++a+++ e++ + +k 
     462873395  12 VLAVDDDSVSLMLIEKQLQHFKY-KVTAVNHAKTALEMLRARRdaedqFDLVITDVHMPDMDAFKLLELIGLEI-DIPVIMLSANDKLETMMKGIKH 106
                   799********************.***************888888889**********************7666.7********************* PP

                   TESEEEESS--HHHHH CS
  Response_reg  93 GakdflsKpfdpeelv 108
                   Ga  +l+Kp+  e+l 
     462873395 107 GACNYLVKPVCLEQLE 122
                   **********999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-369161No hitNo description
SuperFamilySSF521723.7E-319129IPR011006CheY-like superfamily
SMARTSM004489.0E-2710125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.02911129IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2112122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.28E-2313121No hitNo description
Gene3DG3DSA:1.10.10.609.4E-20178229IPR009057Homeodomain-like
SuperFamilySSF466892.15E-12179229IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-20180229IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDLNELRAKM HVLAVDDDSV SLMLIEKQLQ HFKYKVTAVN HAKTALEMLR ARRDAEDQFD  60
LVITDVHMPD MDAFKLLELI GLEIDIPVIM LSANDKLETM MKGIKHGACN YLVKPVCLEQ  120
LENLWIHVVV QNTNDPSISI NNYDDGHHQS QSEDSDNGNV PNQTISKSSR KKKKKDGTKK  180
QRVQWFGQLH RIFVEVVHRL GIDKVVPKKI VEEMNVEGIT RDHVASHLQD ST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175RKKKKKD
2170179KKKKKDGTKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873395
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.13e-82two-component response regulator ORR25-like isoform X1
RefseqXP_025812922.13e-82two-component response regulator ORR24-like isoform X2
SwissprotB8B3I42e-65ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML52e-65ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2S3HI732e-81A0A2S3HI73_9POAL; Uncharacterized protein
STRINGSi007844m8e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1204346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-59response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]