PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462873374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 155aa MW: 17921.8 Da PI: 7.7809 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.8 | 3.7e-08 | 92 | 125 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + 462873374 92 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 125 569*****************************87 PP | |||||||
2 | ELK | 32 | 2.7e-11 | 46 | 67 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ 462873374 46 ELKHELKQGYREKLVDIREEIM 67 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 3.8E-7 | 46 | 67 | IPR005539 | ELK domain |
SMART | SM01188 | 3.8E-4 | 46 | 67 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 46 | 66 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 66 | 129 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.4E-16 | 68 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-10 | 68 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.37E-11 | 69 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 73 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 86 | 125 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MSDDEDNQVD SESNMFEGND GSDGMGFGPL MLTEGERSLV ERVRQELKHE LKQGYREKLV 60 DIREEIMRKR RAGKLPGDTA STLKAWWQAH SKWPYPTEED KARLVQETGL QLKQINNWFI 120 NQRKRNWHSN PASSSSDKSK RKRNTAGDGN AEQSW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 142 | RKRNWHSNPASSSSDKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462873374 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965737.1 | 1e-109 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Refseq | XP_025811840.1 | 1e-109 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Swissprot | Q0E3C3 | 1e-100 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A2S3HHU9 | 1e-108 | A0A2S3HHU9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DW16 | 1e-108 | A0A2T7DW16_9POAL; Uncharacterized protein | ||||
TrEMBL | K3XYC4 | 1e-108 | K3XYC4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db00648.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 3e-79 | KNOTTED1-like homeobox gene 3 |