PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873227
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family E2F/DP
Protein Properties Length: 343aa    MW: 38728.6 Da    PI: 4.8993
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873227genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25.1e-271277171
    E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
               r+++sL llt+kf++ll+++++g+++ln++a++L    v  ++RRiYDi+NVLe+++liek+ kn irwkg
  462873227 12 RYDSSLSLLTKKFINLLKEAKDGTIDLNKAAESL---GV--QKRRIYDITNVLEGVHLIEKTTKNMIRWKG 77
               6899******************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-29878IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.46E-181275IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-341277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-251477IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.91E-2789216No hitNo description
SuperFamilySSF1440743.66E-1991214No hitNo description
PfamPF164216.7E-19126213IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
DAGPLFSSNN CRYDSSLSLL TKKFINLLKE AKDGTIDLNK AAESLGVQKR RIYDITNVLE  60
GVHLIEKTTK NMIRWKGFDM LNPKETELQI STLKEERESL CVEDDRLEDE IRKNVSPFVW  120
KMTVVCREAQ EKLQALALDE DKRKFMYVLK EDINKLPHFQ GSILIAINAP RGTSVEVPDP  180
DEDKYKYGNL GFQDEHYRII LRSSMGPIDC YLISGDHQET FNPDHQVMPN NSKPVVTAGS  240
PQAVQHMDCD PNQSVQHMDC DPNQSVQKMD CDPNETVQRM HCDPSRAPKK GESNAACTHT  300
AEPSTRHESM AGILRIIPWD AGADADCWFA SDPDVSVTDT WGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-221277773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824426.11e-143transcription factor E2FB-like isoform X1
RefseqXP_025824427.11e-143transcription factor E2FB-like isoform X2
TrEMBLA0A2S3I5101e-141A0A2S3I510_9POAL; Uncharacterized protein
TrEMBLA0A2T8IAJ81e-141A0A2T8IAJ8_9POAL; Uncharacterized protein
STRINGGRMZM2G050590_P011e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.29e-75E2F transcription factor 1