 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462873209 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
C3H |
| Protein Properties |
Length: 277aa MW: 30807 Da PI: 8.8327 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462873209 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 30.2 | 7.9e-10 | 14 | 38 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C+f+++ G C++GdrC++ H
462873209 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
6899********************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SISPTLLLCN MYQRPDMITP 60
GVDAQGNPID PERIQEDFED FYEDIFMELS KHGEIENLHV CDNLADHMIG NVYVQFREED 120
QAARALQXXX XXXXXRLPRG TLPPVRGEQL QPRRLLQLHA RQGDWQGDEA EALRSPASLP 180
PELQPRQPEP QXXXXXXXTT TAVAATGGAA RGTAATTATA AGGGVDGRGA GAPLGRAARR 240
GGRGLSNGTV RGRRRRRELL CSRRRLQVSR IQLQVQY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4yh8_A | 4e-44 | 1 | 126 | 1 | 121 | Splicing factor U2AF 23 kDa subunit |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT039260 | 1e-146 | BT039260.1 Zea mays full-length cDNA clone ZM_BFc0002K22 mRNA, complete cds. |
| GenBank | BT039340 | 1e-146 | BT039340.1 Zea mays full-length cDNA clone ZM_BFc0006D14 mRNA, complete cds. |
| GenBank | BT066282 | 1e-146 | BT066282.1 Zea mays full-length cDNA clone ZM_BFc0164N06 mRNA, complete cds. |
| GenBank | BT069407 | 1e-146 | BT069407.1 Zea mays full-length cDNA clone ZM_BFb0118A09 mRNA, complete cds. |
| GenBank | EU960898 | 1e-146 | EU960898.1 Zea mays clone 229462 splicing factor U2af 38 kDa subunit mRNA, complete cds. |
| GenBank | EU967172 | 1e-146 | EU967172.1 Zea mays clone 300006 splicing factor U2af 38 kDa subunit mRNA, complete cds. |
| GenBank | JX428536 | 1e-146 | JX428536.1 Zea mays subsp. mays clone pUT3136 C3H40 C3H type transcription factor mRNA, partial cds. |
