PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462873209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 277aa MW: 30807 Da PI: 8.8327 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.9e-10 | 14 | 38 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f+++ G C++GdrC++ H 462873209 14 DRVNCPFYFKIGACRHGDRCSRLHN 38 6899********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.047 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0055 | 13 | 39 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-7 | 14 | 38 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.2E-41 | 18 | 37 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 3.2E-41 | 37 | 57 | IPR009145 | U2 auxiliary factor small subunit |
Gene3D | G3DSA:3.30.70.330 | 5.9E-18 | 44 | 127 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 8.774 | 55 | 162 | IPR000504 | RNA recognition motif domain |
PRINTS | PR01848 | 3.2E-41 | 75 | 90 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 5.68E-9 | 77 | 127 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.2E-41 | 103 | 125 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SISPTLLLCN MYQRPDMITP 60 GVDAQGNPID PERIQEDFED FYEDIFMELS KHGEIENLHV CDNLADHMIG NVYVQFREED 120 QAARALQXXX XXXXXRLPRG TLPPVRGEQL QPRRLLQLHA RQGDWQGDEA EALRSPASLP 180 PELQPRQPEP QXXXXXXXTT TAVAATGGAA RGTAATTATA AGGGVDGRGA GAPLGRAARR 240 GGRGLSNGTV RGRRRRRELL CSRRRLQVSR IQLQVQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 4e-44 | 1 | 126 | 1 | 121 | Splicing factor U2AF 23 kDa subunit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462873209 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039260 | 1e-146 | BT039260.1 Zea mays full-length cDNA clone ZM_BFc0002K22 mRNA, complete cds. | |||
GenBank | BT039340 | 1e-146 | BT039340.1 Zea mays full-length cDNA clone ZM_BFc0006D14 mRNA, complete cds. | |||
GenBank | BT066282 | 1e-146 | BT066282.1 Zea mays full-length cDNA clone ZM_BFc0164N06 mRNA, complete cds. | |||
GenBank | BT069407 | 1e-146 | BT069407.1 Zea mays full-length cDNA clone ZM_BFb0118A09 mRNA, complete cds. | |||
GenBank | EU960898 | 1e-146 | EU960898.1 Zea mays clone 229462 splicing factor U2af 38 kDa subunit mRNA, complete cds. | |||
GenBank | EU967172 | 1e-146 | EU967172.1 Zea mays clone 300006 splicing factor U2af 38 kDa subunit mRNA, complete cds. | |||
GenBank | JX428536 | 1e-146 | JX428536.1 Zea mays subsp. mays clone pUT3136 C3H40 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A287RSR1 | 3e-93 | A0A287RSR1_HORVV; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 5e-29 | C3H family protein |