PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873084
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 144aa    MW: 16233.5 Da    PI: 10.9503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873084genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1985139256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+++
  462873084  85 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARRR 139
                788899***********************************************98 PP
2HD-ZIP_I/II82.85e-2785139155
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 
                  +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRAR +
    462873084  85 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARRR 139
                  69***************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1971135IPR009057Homeodomain-like
SuperFamilySSF466891.84E-1875139IPR009057Homeodomain-like
PROSITE profilePS5007117.29781141IPR001356Homeobox domain
SMARTSM003893.7E-1483144IPR001356Homeobox domain
PfamPF000466.6E-1785139IPR001356Homeobox domain
CDDcd000864.28E-1685141No hitNo description
PRINTSPR000312.0E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000312.0E-6121137IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMERADDLGL SLSLSSSLAP RTHHVAMLLR SPVINNTMHM WRSGSEKRFL EMPLLPAKRS  60
EVAAEDGLRG GSDEEDGGCG IDGSRKKLRL SKDQSAVLED SFREHPTLNP RQKAALAQQL  120
GLRPRQVEVW FQNRRARRRW TASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389SRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873084
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824502.14e-66homeobox-leucine zipper protein HOX17-like
SwissprotQ01I232e-52HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A2S3I9188e-65A0A2S3I918_9POAL; Uncharacterized protein
TrEMBLA0A2T7CY888e-65A0A2T7CY88_9POAL; Uncharacterized protein
STRINGPavir.Gb01134.1.p4e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-30homeobox protein 2