PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462873016

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 422aa MW: 46310.8 Da PI: 8.8349

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462873016	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl 462873016 37 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-32	34	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.347	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-16	36	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	39	89	IPR001005	SANT/Myb domain
Pfam	PF14379	4.5E-9	132	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.7E-24	197	243	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MFPSKKATSA AAAAVSSNDR GMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVTQLGGP 60 DKATPKTIMR VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN DHSVKDAAAM EMQLNAASSS 120 GMMGRGINDR NHMNEAIRMQ MEVQRRLHEQ LEKFRLGKQP HKEFNDHSVK DAAAMEMQLN 180 AASSSGMMGR GINDRNHMNE AIRMQMEVQR RLHEQLEVQK HLQIRIEAQG KYMQSILQKA 240 YQTIATGDVV SCPAGYKSLG NQGILDVCSL KDMGPSVGFP SLQDLHMYGG GGHLDLHQQM 300 DRPMESFFAC SDGSIGSLGK KRPNPYAAAG KSPMMWGDDE QGKLSEDLQM APPMIDAGID 360 VMDSIADVYG DAKSMMSGDS AGSKGGFDGK LERPSPRRPH MGGERMGSPS VMGGQTRNMS 420 YG

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MFPSKKATSA AAAAVSSNDR GMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVTQLGGP  60
DKATPKTIMR VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN DHSVKDAAAM EMQLNAASSS  120
GMMGRGINDR NHMNEAIRMQ MEVQRRLHEQ LEKFRLGKQP HKEFNDHSVK DAAAMEMQLN  180
AASSSGMMGR GINDRNHMNE AIRMQMEVQR RLHEQLEVQK HLQIRIEAQG KYMQSILQKA  240
YQTIATGDVV SCPAGYKSLG NQGILDVCSL KDMGPSVGFP SLQDLHMYGG GGHLDLHQQM  300
DRPMESFFAC SDGSIGSLGK KRPNPYAAAG KSPMMWGDDE QGKLSEDLQM APPMIDAGID  360
VMDSIADVYG DAKSMMSGDS AGSKGGFDGK LERPSPRRPH MGGERMGSPS VMGGQTRNMS  420
YG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462873016

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728052	1e-125	KJ728052.1 Zea mays clone pUT6198 G2-like transcription factor (GLK53) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951748.1	1e-180	myb family transcription factor APL
Swissprot	Q9SAK5	4e-69	APL_ARATH; Myb family transcription factor APL
TrEMBL	K3YTL2	1e-179	K3YTL2_SETIT; Uncharacterized protein
STRING	Si017608m	1e-180	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	9e-70	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]