PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462870918

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 357aa MW: 39565.5 Da PI: 7.6255

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462870918	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	198	217	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ 462870918 198 FICHVCSKTFNRYNNMQMHM 217 89*****************9 PP
2	zf-C2H2	12.4	0.00049	284	306	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ 462870918 284 FGCRRCGKPFAVKGDWRTHEKNC 306 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.6E-5	194	221	No hit	No description
PROSITE profile	PS50157	10.138	198	225	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.8E-5	198	217	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	200	220	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MESAAGMGVQ FFEWLKPRSS SPPASPSSFS SSTSSSTLST PSIDRSVIGD GLVATSLCLP 60 LLGRFEERST SSDQGRNNPI KEELSNNIST TTGTGGEAGL DLNIGLPAID DYTSESEEAT 120 MDEEDEENDS EEEEKPARQH EVCKAEAGEQ VRIEMMEGSD DCLRIGGEEN MIKGIFSSRG 180 RRYWIPTPAQ ILVGPVQFIC HVCSKTFNRY NNMQMHMWGH GREYRKGPES LKGTQAATLA 240 LLKLPCYCCA PGCRNSVAHP RARPLKDFRT LQTHYKRKHG AKQFGCRRCG KPFAVKGDWR 300 THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGGGHLPVVA PADQQQQAPT LMRWLVS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MESAAGMGVQ FFEWLKPRSS SPPASPSSFS SSTSSSTLST PSIDRSVIGD GLVATSLCLP  60
LLGRFEERST SSDQGRNNPI KEELSNNIST TTGTGGEAGL DLNIGLPAID DYTSESEEAT  120
MDEEDEENDS EEEEKPARQH EVCKAEAGEQ VRIEMMEGSD DCLRIGGEEN MIKGIFSSRG  180
RRYWIPTPAQ ILVGPVQFIC HVCSKTFNRY NNMQMHMWGH GREYRKGPES LKGTQAATLA  240
LLKLPCYCCA PGCRNSVAHP RARPLKDFRT LQTHYKRKHG AKQFGCRRCG KPFAVKGDWR  300
THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGGGHLPVVA PADQQQQAPT LMRWLVS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462870918

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359222	1e-162	AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961925.1	1e-163	protein TRANSPARENT TESTA 1
TrEMBL	K3Z6X6	1e-161	K3Z6X6_SETIT; Uncharacterized protein
STRING	Si022296m	1e-162	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-93	WIP domain protein 5