PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462870894

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 506aa MW: 56151.2 Da PI: 6.7927

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462870894	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.5	1e-11	167	197	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k err+++NReAAr+sR+RKka++++Le+ 462870894 167 DDKMERRLAQNREAARKSRLRKKAYVQQLET 197 5899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-6	165	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	167	211	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.3E-8	168	197	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-7	169	210	No hit	No description
SuperFamily	SSF57959	1.62E-6	169	210	No hit	No description
PROSITE pattern	PS00036	0	172	187	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.1E-30	277	352	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
ELYSLSWCLV ILGDGRELQP TACFGELEKA LIHGSRTAVD PSMIGSDVHA NTAGYLAARP 60 PTLEIFPSWP MSHLQQPYSG NSQSVGSTSG SSSGQSTMPQ AAELVSPLST GADSGHQQEA 120 LMVTVDDYNY GQGLGATADT APIFQQHTAG QDKRKHGSTR KDGRLLDDKM ERRLAQNREA 180 ARKSRLRKKA YVQQLETCRI RLQQIEQELH RPRSQGSFQG GCSGPGDMSS GNHLIQLLRM 240 NSYGLTISYS STNGCVITGA IMFDMEYTRW LDDESKHLTE LRGALHAQLI DASLGVIVED 300 CMRHYDELFH LRAVLARSDV FHLMTGMWAT SAERCFLWMG GFRPSEILKM LIPQLDPLTE 360 QQLLGMYNLQ HSSEQAEEAL VQGLQQLHQS LADAVGAGPL NDGASVANYT GLMGLALDRL 420 DSLESFYRQA DNLRQQALHH MRRILTTRQT ARSFLSIGEY HRRLRALSTA WTCRPRENSA 480 ATENVSPTGA EHLMQHQYHQ SQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

ELYSLSWCLV ILGDGRELQP TACFGELEKA LIHGSRTAVD PSMIGSDVHA NTAGYLAARP  60
PTLEIFPSWP MSHLQQPYSG NSQSVGSTSG SSSGQSTMPQ AAELVSPLST GADSGHQQEA  120
LMVTVDDYNY GQGLGATADT APIFQQHTAG QDKRKHGSTR KDGRLLDDKM ERRLAQNREA  180
ARKSRLRKKA YVQQLETCRI RLQQIEQELH RPRSQGSFQG GCSGPGDMSS GNHLIQLLRM  240
NSYGLTISYS STNGCVITGA IMFDMEYTRW LDDESKHLTE LRGALHAQLI DASLGVIVED  300
CMRHYDELFH LRAVLARSDV FHLMTGMWAT SAERCFLWMG GFRPSEILKM LIPQLDPLTE  360
QQLLGMYNLQ HSSEQAEEAL VQGLQQLHQS LADAVGAGPL NDGASVANYT GLMGLALDRL  420
DSLESFYRQA DNLRQQALHH MRRILTTRQT ARSFLSIGEY HRRLRALSTA WTCRPRENSA  480
ATENVSPTGA EHLMQHQYHQ SQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462870894

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961926.1	0.0	transcription factor TGAL5 isoform X1
Refseq	XP_022680634.1	0.0	transcription factor TGAL5 isoform X1
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A368QHY5	0.0	A0A368QHY5_SETIT; Uncharacterized protein
STRING	OMERI05G15000.1	0.0	(Oryza meridionalis)
STRING	OS05T0443900-01	0.0	(Oryza sativa)
STRING	Traes_1AL_3B659AABA.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-123	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]