PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462870591
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 461aa    MW: 50882.2 Da    PI: 8.1997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462870591genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.8e-113458327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C++++rtG C++G +CkF+H+p
  462870591 34 EPDCSYYMRTGLCRFGMTCKFNHPP 58
               789********************97 PP
2zf-CCCH38.81.5e-1285109327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C++++rtGtCk+G++CkF+H++
  462870591  85 QPECQYYLRTGTCKFGATCKFHHPR 109
                799********************96 PP
3zf-CCCH314.4e-10131155327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +++rtG+Ck+ ++CkF+H++
  462870591 131 EKECAYYLRTGQCKFASTCKFHHPQ 155
                679********************97 PP
4zf-CCCH39.96.8e-13327352227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++tG Ck+G+ CkF+H++
  462870591 327 DQPECQFYMKTGDCKFGAVCKFNHPK 352
                689*********************96 PP
5zf-CCCH33.19.4e-11372398127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C f++r+ +Ck+G++CkF H++
  462870591 372 PGEPICTFYSRYAICKFGPNCKFDHPM 398
                5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2813159IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-53158IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-83458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-43757IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.47882110IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-582109IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-1085109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-588110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5128156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324128156IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4128155IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7131155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455325353IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5325352IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5328354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5331353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685371399IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5371398IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8373398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5375400IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLYVRTVVLE AMWQMTLGGG ESLEPGPYPE RIGEPDCSYY MRTGLCRFGM TCKFNHPPNR  60
KLNSDNSKAV AAARMKGEYP YRAGQPECQY YLRTGTCKFG ATCKFHHPRE KAAVTTHVQL  120
NVLGYPLRPN EKECAYYLRT GQCKFASTCK FHHPQPSNTG AALHGSVYSP GQSATSPGQH  180
TYPGAVSNWA MSRSASYIAN PRWPGHSAYA QVIVPQSLVQ VPGWNPYAVC SLTLSSNFNS  240
FVSLTNMAVH GLTELANNHV PPWAQMGSTS PDHQQRTPGT IQYYQGTYQS ETTGMGEHGM  300
FPSYQGGSVP VGHYAAQGEN IFPERPDQPE CQFYMKTGDC KFGAVCKFNH PKERLIPAPN  360
CALNPLGLPL RPGEPICTFY SRYAICKFGP NCKFDHPMGT LMYGTATSPT DDAPTMNYQL  420
EPSPRQSERY LDGGSGRSHR ISQSDSQQIP SENGSTEREA S
Cis-element ? help Back to Top
SourceLink
PlantRegMap462870591
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2T7EGI00.0A0A2T7EGI0_9POAL; Uncharacterized protein
TrEMBLA0A3L6REA40.0A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-142zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]