PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462870591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 461aa MW: 50882.2 Da PI: 8.1997 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.8e-11 | 34 | 58 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p 462870591 34 EPDCSYYMRTGLCRFGMTCKFNHPP 58 789********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 85 | 109 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtGtCk+G++CkF+H++ 462870591 85 QPECQYYLRTGTCKFGATCKFHHPR 109 799********************96 PP | |||||||
3 | zf-CCCH | 31 | 4.4e-10 | 131 | 155 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ 462870591 131 EKECAYYLRTGQCKFASTCKFHHPQ 155 679********************97 PP | |||||||
4 | zf-CCCH | 39.9 | 6.8e-13 | 327 | 352 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ 462870591 327 DQPECQFYMKTGDCKFGAVCKFNHPK 352 689*********************96 PP | |||||||
5 | zf-CCCH | 33.1 | 9.4e-11 | 372 | 398 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+ +Ck+G++CkF H++ 462870591 372 PGEPICTFYSRYAICKFGPNCKFDHPM 398 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.281 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 34 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-4 | 37 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.478 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-10 | 85 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 88 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-5 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-7 | 131 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 327 | 352 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 328 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-5 | 331 | 353 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.685 | 371 | 399 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-5 | 371 | 398 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-8 | 373 | 398 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 375 | 400 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MLYVRTVVLE AMWQMTLGGG ESLEPGPYPE RIGEPDCSYY MRTGLCRFGM TCKFNHPPNR 60 KLNSDNSKAV AAARMKGEYP YRAGQPECQY YLRTGTCKFG ATCKFHHPRE KAAVTTHVQL 120 NVLGYPLRPN EKECAYYLRT GQCKFASTCK FHHPQPSNTG AALHGSVYSP GQSATSPGQH 180 TYPGAVSNWA MSRSASYIAN PRWPGHSAYA QVIVPQSLVQ VPGWNPYAVC SLTLSSNFNS 240 FVSLTNMAVH GLTELANNHV PPWAQMGSTS PDHQQRTPGT IQYYQGTYQS ETTGMGEHGM 300 FPSYQGGSVP VGHYAAQGEN IFPERPDQPE CQFYMKTGDC KFGAVCKFNH PKERLIPAPN 360 CALNPLGLPL RPGEPICTFY SRYAICKFGP NCKFDHPMGT LMYGTATSPT DDAPTMNYQL 420 EPSPRQSERY LDGGSGRSHR ISQSDSQQIP SENGSTEREA S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462870591 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810066.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A2T7EGI0 | 0.0 | A0A2T7EGI0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6REA4 | 0.0 | A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2 | ||||
STRING | BRADI4G08050.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-142 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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