PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462870342
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 178aa    MW: 19173.6 Da    PI: 8.708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462870342genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-161967255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r  +++g+Wv+eIr+       + +r++lg+f tae+Aa a++ a+++l+g
  462870342 19 FYRGIR--SRSGKWVSEIRElR-----KaRRIWLGTFSTAEMAAVAYDVAARALRG 67
               69***6..678*********55.....46*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.9791975IPR001471AP2/ERF domain
SMARTSM003804.5E-271981IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-171975IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-262075IPR001471AP2/ERF domain
CDDcd000182.62E-252075No hitNo description
PfamPF008472.1E-82067IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSAHGGGRSS PLSTAKHPFY RGIRSRSGKW VSEIRELRKA RRIWLGTFST AEMAAVAYDV  60
AARALRGPEA ALNFPGLAAA RPEPASAVAE AAAAAAAAEA LWRTRTRHCP RGLYCDGGGS  120
SALNPYFLDE EALFETPQFL RNMAAGMMMS PPRISPNSFD DSPDPSEAGE SLWSYRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1415751072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462870342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557519e-70EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825905.11e-71ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ904e-35ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A9B4N52e-75A0A0A9B4N5_ARUDO; Uncharacterized protein
STRINGPavir.Gb00885.1.p2e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-25ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]