PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869469
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 514aa    MW: 54457.7 Da    PI: 5.724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869469genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-33346404159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+ +d ++v++tYeg+Hnh+
  462869469 346 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAAGCPVRKHVERAGHDARAVITTYEGKHNHD 404
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-34338406IPR003657WRKY domain
SuperFamilySSF1182904.32E-29339406IPR003657WRKY domain
PROSITE profilePS5081138.216341406IPR003657WRKY domain
SMARTSM007741.5E-38346405IPR003657WRKY domain
PfamPF031061.1E-25347404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MTSAPASLGS LANSGPVALS FGSFLGGGSR LKTMAPSSLP LSPSSCFNAA SGFLESPILL  60
TPSLFPSPTT GTFPSEPFNW MGTTENLQES VKEDQQRQGF DFTFQMAAAV PPATMAGATQ  120
AESFPQSSVL MAPLGGLGDS SYNSEPQPWS YQEQAAMDFN APPFEAPSSV ATATQPAELH  180
MHGGYGFREQ TTSRRSSDEG EREPAELLQV LLPGLPHQEE GGAVARRPGH GDRVQGLAQP  240
RQARAGRAPR RRRLGFRGVD VRAAFGAQMS GTPVATPENS SAGSFADDDV NGVSSSLVGD  300
FGADEFFAND EPDSKKWRDG GGDGEGVSLQ ASGGGNRATM SDIDVLDDGY RWRKYGQKVV  360
KGNPNPRSYY KCTAAGCPVR KHVERAGHDA RAVITTYEGK HNHDVPPARG ATSLYHRAAA  420
TQQQQATAGG VVVRPAPVQA AAGQTSGAGF ALSGFGDAMG ASSYAYARHD HHHHQQQQQQ  480
QQQSDAMYSY ASTTKDEPSD ADDMTSFFEQ PLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34331406277Probable WRKY transcription factor 4
2lex_A3e-34331406277Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869469
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0861225e-83BT086122.1 Zea mays full-length cDNA clone ZM_BFc0118C12 mRNA, complete cds.
GenBankEU9570975e-83EU957097.1 Zea mays clone 1582655 WRKY53 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.11e-146WRKY transcription factor WRKY24
RefseqXP_025809961.11e-146WRKY transcription factor WRKY24-like
TrEMBLA0A1E5UYK51e-153A0A1E5UYK5_9POAL; Putative WRKY transcription factor 33
STRINGPavir.J03800.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.15e-44WRKY DNA-binding protein 33