PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869334
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 437aa    MW: 47243.6 Da    PI: 10.7749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869334genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31371428359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  462869334 371 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 428
                9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-16321367IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-33357428IPR003657WRKY domain
PROSITE profilePS5081130.148364427IPR003657WRKY domain
SuperFamilySSF1182907.19E-27367428IPR003657WRKY domain
SMARTSM007744.4E-38369429IPR003657WRKY domain
PfamPF031066.6E-27371427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
PRSSPVLSSS PLFRCCASLL VSDGRRPPSP IPSAPHVQRR NAQPVRRRRC CSWEWRGAEF  60
HLSWRGETRV QTEPSVSSPF SGMEEVEAAN RAAVESCHRV LALLSQQQDP ALLKSIASET  120
GEACAKFRKV TALLGDGGGG RSGHARGRFS GRGRPMGFLS HKGVLGSGSG NAVETMPSCS  180
AAPSSSTSYA QLRARVNGAS ESRGLDLASL SGAHQLGAPK LVQPLSVQFQ IGNVAHRYPF  240
HQQPSRQKLQ AEMFKRSNSG ISLKFDSPSA SVATGTMSSA RSYMSSLSMD GSVVSLEGKR  300
PFHLVGVPVA SDPADVQHAP KRRCMGKGED GRGKCAVTGR CHCSKRSRKL RNKRSIKVPA  360
ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPAMLIVT  420
YEGEHNHTRL PAQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20357432276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869334
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
SwissprotO043361e-88WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-62WRKY DNA-binding protein 21