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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462869334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 437aa MW: 47243.6 Da PI: 10.7749 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 2.9e-31 | 371 | 428 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ 462869334 371 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 428 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.7E-16 | 321 | 367 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-33 | 357 | 428 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.148 | 364 | 427 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-27 | 367 | 428 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-38 | 369 | 429 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-27 | 371 | 427 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
PRSSPVLSSS PLFRCCASLL VSDGRRPPSP IPSAPHVQRR NAQPVRRRRC CSWEWRGAEF 60 HLSWRGETRV QTEPSVSSPF SGMEEVEAAN RAAVESCHRV LALLSQQQDP ALLKSIASET 120 GEACAKFRKV TALLGDGGGG RSGHARGRFS GRGRPMGFLS HKGVLGSGSG NAVETMPSCS 180 AAPSSSTSYA QLRARVNGAS ESRGLDLASL SGAHQLGAPK LVQPLSVQFQ IGNVAHRYPF 240 HQQPSRQKLQ AEMFKRSNSG ISLKFDSPSA SVATGTMSSA RSYMSSLSMD GSVVSLEGKR 300 PFHLVGVPVA SDPADVQHAP KRRCMGKGED GRGKCAVTGR CHCSKRSRKL RNKRSIKVPA 360 ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPAMLIVT 420 YEGEHNHTRL PAQSAQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 357 | 432 | 2 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462869334 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809630.1 | 0.0 | protein WRKY1-like isoform X1 | ||||
Swissprot | O04336 | 1e-88 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A2T7EIW2 | 0.0 | A0A2T7EIW2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38176.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 5e-62 | WRKY DNA-binding protein 21 |