PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462869253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 28943.5 Da PI: 7.973 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.8e-14 | 104 | 146 | 11 | 56 |
AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++ WvAeIr p + r r++lg+++++e Aa a+++a+ kl+ge 462869253 104 QQKLWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 146 4678*******954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.555 | 96 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-18 | 102 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-16 | 103 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-21 | 103 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-8 | 105 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.54E-20 | 108 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDASLRTLPP AGFPGEVRSA VSSLLLSPGG ASALDTVFSH LPPPVTIPPL GSSVYYRQCE 60 LLRHFAASQP AACSSASSSS SSSASSTSCF QAAAAMDEAA ALRQQKLWVA EIRLPQNRVR 120 VWLGTYDSPE TAAHAYDRAA FKLRGEYARL NFPGVMDARD CPENLHPLRA AVDAKIQAIR 180 ARLARKRAKA RKQREEQSKQ REGASEKKPA PTATTAVSEG ATTTSETTST TTPYGSPDGV 240 LSVSAASGDG ELPLDHMPSF DPELIWELLN F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 189 | ARKRAKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462869253 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104284 | 7e-90 | AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence. | |||
GenBank | AP014961 | 7e-90 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT837611 | 7e-90 | CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence. | |||
GenBank | CT841687 | 7e-90 | CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638431.1 | 1e-107 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A0E0A326 | 1e-108 | A0A0E0A326_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HIS0 | 1e-108 | A0A0E0HIS0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2Y7P9 | 1e-108 | A2Y7P9_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM05G28130.1 | 1e-109 | (Oryza glumipatula) | ||||
STRING | ONIVA05G28560.1 | 1e-109 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 3e-20 | ERF family protein |