PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869253
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 271aa    MW: 28943.5 Da    PI: 7.973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869253genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.8e-141041461156
        AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +++ WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  462869253 104 QQKLWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 146
                4678*******954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.55596153IPR001471AP2/ERF domain
SMARTSM003801.8E-18102159IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-16103153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-21103153IPR001471AP2/ERF domain
PfamPF008474.4E-8105146IPR001471AP2/ERF domain
CDDcd000185.54E-20108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDASLRTLPP AGFPGEVRSA VSSLLLSPGG ASALDTVFSH LPPPVTIPPL GSSVYYRQCE  60
LLRHFAASQP AACSSASSSS SSSASSTSCF QAAAAMDEAA ALRQQKLWVA EIRLPQNRVR  120
VWLGTYDSPE TAAHAYDRAA FKLRGEYARL NFPGVMDARD CPENLHPLRA AVDAKIQAIR  180
ARLARKRAKA RKQREEQSKQ REGASEKKPA PTATTAVSEG ATTTSETTST TTPYGSPDGV  240
LSVSAASGDG ELPLDHMPSF DPELIWELLN F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189ARKRAKA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042847e-90AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAP0149617e-90AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCT8376117e-90CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence.
GenBankCT8416877e-90CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-107ethylene-responsive transcription factor ERF061
TrEMBLA0A0E0A3261e-108A0A0E0A326_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HIS01e-108A0A0E0HIS0_ORYNI; Uncharacterized protein
TrEMBLA2Y7P91e-108A2Y7P9_ORYSI; Uncharacterized protein
STRINGOGLUM05G28130.11e-109(Oryza glumipatula)
STRINGONIVA05G28560.11e-109(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-20ERF family protein