PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868933
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 358aa    MW: 39532.3 Da    PI: 6.6839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868933genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06122143223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +Cgk F+r  nL+ H+r H
  462868933 122 FCLICGKGFKRDANLRMHMRGH 143
                6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.33E-5119146No hitNo description
PROSITE profilePS5015711.552121148IPR007087Zinc finger, C2H2
SMARTSM003550.012121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-5123147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035571170203IPR015880Zinc finger, C2H2-like
SMARTSM0035522208230IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKNPLSSNPA VRQLGNSLGS PMGFGMNANQ RPSTNNKTVM PDAEKTSDYE ELMNSINTNQ  60
DEKDELIKCP NPCGGEGSEP TPMDDHDVKE SDDGGEGENL PPGSYVVLQL EKEEILAPHT  120
HFCLICGKGF KRDANLRMHM RGHGDEYKTP AALAKPSKDS SSDHAPVTRY SCPFVGCKRN  180
KEHKKFQPLK TILCVKNHYK RSHCDKSYTC SRCNTKKFSV IADLKTHEKH CGRDKWLCSC  240
GTTFSRKDKL FGHVALFQGH TPALPMDDVK VSEASEQPQG SEAMNEITRN IGYNMPCSSS  300
DGISNLDMKV ADDPRGYFSP LNFDPCFGAL DDFARPGFDI SENPFSFLPS GSSSFGQN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868933
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847340.0KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBankKF1849410.0KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149728.20.0uncharacterized protein LOC100283355
RefseqXP_020397739.10.0uncharacterized LOC100283355 isoform X1
RefseqXP_020397740.10.0uncharacterized LOC100283355 isoform X1
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLC0HEH20.0C0HEH2_MAIZE; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGGRMZM2G075956_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-127C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]