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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462868679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 1143aa MW: 125039 Da PI: 5.1998 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ 462868679 27 KYVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 152.8 | 3e-48 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aee+++e+v+ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ + g g+++l +++++ 462868679 167 IAEETLTEFVSKATGTAIDWVQMPGMKPGPDSFGIVSISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYMQMY 265 789*******************************************************9999999999.****************9999*********** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195 a+++lvp +df+++Ry++++++g++v++++S++ + +++vRae+lpSg+l++p+++g+s v++v+h l++++++++lr+l++s+++ ++k+ 462868679 266 APTTLVPaQDFWTLRYTKTMEDGSLVVCERSLSGSGGGQGaasPQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLCLEAWSVPEVLRPLYESSRVVAQKM 365 *********************************8877776665678****************************************************** PP HHHHTXXXX CS START 196 wvatlqrqc 204 ++a+l++ + 462868679 366 TTAALRHIR 374 *****9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 7 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.451 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-16 | 24 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.43E-17 | 27 | 87 | No hit | No description |
SuperFamily | SSF46689 | 2.87E-16 | 27 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.8E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 7.26E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 25.265 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 1.43E-70 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.8E-17 | 166 | 348 | IPR023393 | START-like domain |
SMART | SM00234 | 5.2E-35 | 166 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-32 | 166 | 378 | No hit | No description |
Pfam | PF01852 | 6.1E-46 | 167 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 6.9E-9 | 843 | 888 | IPR013978 | MEKHLA |
Pfam | PF08670 | 2.6E-13 | 1032 | 1117 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1143 aa Download sequence Send to blast |
MAAAVAMRSG SSDGGGGYDK GGVDSGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNKLLMEEN ERLQKQVSQL 120 VHENAYMKQQ LQNVQNPSFA NDTSCESNVA TPVNLKDASN PSGLLSIAEE TLTEFVSKAT 180 GTAIDWVQMP GMKPGPDSFG IVSISHGCRG VAARACGLVN LEPTKIVEIL KDRPSWFRDC 240 RSLEVFTMLP AGNGGTIELV YMQMYAPTTL VPAQDFWTLR YTKTMEDGSL VVCERSLSGS 300 GGGQGAASPQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL CLEAWSVPEV LRPLYESSRV 360 VAQKMTTAAL RHIRQIAQET SGEVVYVLGR QPAVLRTFSQ RLSRGFNDAI SGFHDDGWSV 420 LGGDGAEDVI IACNTKMIRN NHNAASAFGA PGGIICAKAS MLLKGVPPAE LIRLLREHRS 480 EWADYNFDAY SASALKACPG SLPGLRPMRF SGNQIILPLA HTVENEEGVP PAELIRLLRE 540 HRSEWADYNF DAYSASALKA CPGSLPGLRP MRFSGNQIIL PLAHTVENEE ILEIVRLEGQ 600 ALTHEDGFLS RDIHLLQLCT GTEEKSMGSC FQLVFAPIDE LFPDDAPLIS SGFRVIPLGI 660 KTDGVPSGRT LDLASSLEVG SATQQTSADA SQDDCNLRSL CTGTEEKSMG SCFQLVFAPI 720 DELFPDDAPL ISSGFRVIPL GIKTDGVPSG RTLDLASSLE VGSATQQTSA DASQDDCNLR 780 SVLTIAFQFP YEIHLQDSVV TMARQYVRSI VSAVQRVSIT ISPSRSGLIT GNKIISGFPE 840 AATLVRWICQ SYQYHLGLEL VPHSDEVGEA LLRMFWDHQD AILCCSFKLC TGTEEKSMGS 900 CFQLVFAPID ELFPDDAPLI SSGFRVIPLG IKTDGVPSGR TLDLASSLEV GSATQQTSAD 960 ASQDDCNLRS VLTIAFQFPY EIHLQDSVAT MARQYVRSIV SAVQRVSITI SPSRSGLNTG 1020 NKIISGFPEA ATLVRWICQS YQYHLGLELV PHSDEVGEAL LRMFWDHQDA ILCCSFKMGI 1080 DMLETTLIAL QDLSLDKIFD EPGRKILYAQ FPKLMEQLSK HPSLAQHPAQ PVQDALDGFD 1140 FFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462868679 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468669.1 | 0.0 | homeobox-leucine zipper protein HOX10 isoform X2 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A3L6TQN4 | 0.0 | A0A3L6TQN4_PANMI; Uncharacterized protein | ||||
STRING | Sb01g050000.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |