PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868679
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 1143aa    MW: 125039 Da    PI: 5.1998
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868679genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-182785357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ +q+kvWFqNrR ++k+
  462868679 27 KYVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
               5678****************************************************996 PP

2START152.83e-481673742204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+v+ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l +++++
  462868679 167 IAEETLTEFVSKATGTAIDWVQMPGMKPGPDSFGIVSISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYMQMY 265
                789*******************************************************9999999999.****************9999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++lvp +df+++Ry++++++g++v++++S++     +     +++vRae+lpSg+l++p+++g+s v++v+h  l++++++++lr+l++s+++ ++k+
  462868679 266 APTTLVPaQDFWTLRYTKTMEDGSLVVCERSLSGSGGGQGaasPQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLCLEAWSVPEVLRPLYESSRVVAQKM 365
                *********************************8877776665678****************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                ++a+l++ +
  462868679 366 TTAALRHIR 374
                *****9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-18785IPR009057Homeodomain-like
PROSITE profilePS5007115.4512286IPR001356Homeobox domain
SMARTSM003891.9E-162490IPR001356Homeobox domain
CDDcd000867.43E-172787No hitNo description
SuperFamilySSF466892.87E-162788IPR009057Homeodomain-like
PfamPF000465.8E-162885IPR001356Homeobox domain
CDDcd146867.26E-679118No hitNo description
PROSITE profilePS5084825.265157385IPR002913START domain
CDDcd088751.43E-70161377No hitNo description
Gene3DG3DSA:3.30.530.208.8E-17166348IPR023393START-like domain
SMARTSM002345.2E-35166376IPR002913START domain
SuperFamilySSF559612.88E-32166378No hitNo description
PfamPF018526.1E-46167374IPR002913START domain
PfamPF086706.9E-9843888IPR013978MEKHLA
PfamPF086702.6E-1310321117IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1143 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGGGYDK GGVDSGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNVQNPSFA NDTSCESNVA TPVNLKDASN PSGLLSIAEE TLTEFVSKAT  180
GTAIDWVQMP GMKPGPDSFG IVSISHGCRG VAARACGLVN LEPTKIVEIL KDRPSWFRDC  240
RSLEVFTMLP AGNGGTIELV YMQMYAPTTL VPAQDFWTLR YTKTMEDGSL VVCERSLSGS  300
GGGQGAASPQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL CLEAWSVPEV LRPLYESSRV  360
VAQKMTTAAL RHIRQIAQET SGEVVYVLGR QPAVLRTFSQ RLSRGFNDAI SGFHDDGWSV  420
LGGDGAEDVI IACNTKMIRN NHNAASAFGA PGGIICAKAS MLLKGVPPAE LIRLLREHRS  480
EWADYNFDAY SASALKACPG SLPGLRPMRF SGNQIILPLA HTVENEEGVP PAELIRLLRE  540
HRSEWADYNF DAYSASALKA CPGSLPGLRP MRFSGNQIIL PLAHTVENEE ILEIVRLEGQ  600
ALTHEDGFLS RDIHLLQLCT GTEEKSMGSC FQLVFAPIDE LFPDDAPLIS SGFRVIPLGI  660
KTDGVPSGRT LDLASSLEVG SATQQTSADA SQDDCNLRSL CTGTEEKSMG SCFQLVFAPI  720
DELFPDDAPL ISSGFRVIPL GIKTDGVPSG RTLDLASSLE VGSATQQTSA DASQDDCNLR  780
SVLTIAFQFP YEIHLQDSVV TMARQYVRSI VSAVQRVSIT ISPSRSGLIT GNKIISGFPE  840
AATLVRWICQ SYQYHLGLEL VPHSDEVGEA LLRMFWDHQD AILCCSFKLC TGTEEKSMGS  900
CFQLVFAPID ELFPDDAPLI SSGFRVIPLG IKTDGVPSGR TLDLASSLEV GSATQQTSAD  960
ASQDDCNLRS VLTIAFQFPY EIHLQDSVAT MARQYVRSIV SAVQRVSITI SPSRSGLNTG  1020
NKIISGFPEA ATLVRWICQS YQYHLGLELV PHSDEVGEAL LRMFWDHQDA ILCCSFKMGI  1080
DMLETTLIAL QDLSLDKIFD EPGRKILYAQ FPKLMEQLSK HPSLAQHPAQ PVQDALDGFD  1140
FFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468669.10.0homeobox-leucine zipper protein HOX10 isoform X2
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A3L6TQN40.0A0A3L6TQN4_PANMI; Uncharacterized protein
STRINGSb01g050000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein