PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462868220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 42193.9 Da PI: 9.1739 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.1e-10 | 25 | 51 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p 462868220 25 PGEPDCTYYLRTGLCRFGMSCRFNHPP 51 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.3 | 2.2e-12 | 72 | 96 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ 462868220 72 QPECQYYLKTGTCKFGPTCKFHHPR 96 799********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7.2e-12 | 118 | 142 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ 462868220 118 EKECAYYLKTGHCKYGETCKFHHPE 142 679********************96 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 269 | 294 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G CkF+H++ 462868220 269 DQPECQYYMKTGDCKFGVVCKFHHPR 294 689*********************96 PP | |||||||
5 | zf-CCCH | 42.8 | 8.7e-14 | 314 | 340 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G++CkF H++ 462868220 314 PGEELCKFYSRYGICKFGANCKFDHPM 340 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 24 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-8 | 26 | 51 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 29 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 30 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-10 | 72 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-6 | 73 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 75 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 115 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 115 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 115 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 118 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 121 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 267 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.65E-5 | 270 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 273 | 293 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 313 | 341 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-8 | 313 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 317 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MKGLWQQMAM NSGATMQPGP YPERPGEPDC TYYLRTGLCR FGMSCRFNHP PDRNLAIASA 60 RMKGEYPERV GQPECQYYLK TGTCKFGPTC KFHHPREKAG IAGRVQLNTL GYPLRPNEKE 120 CAYYLKTGHC KYGETCKFHH PEVFNAVASS RGSPIYPSVH SSARAGPHSY TGTIASWAFP 180 RASFIPSPRW QSPSNYTPMI VPQGLVQVPS WNSYPSQLQS PGAQRTYGTS QQGESSAGNQ 240 GMLSPYRSSS YPVPQYELQR ENVFPERPDQ PECQYYMKTG DCKFGVVCKF HHPRVRSLPP 300 PDCVLSPMGL PLRPGEELCK FYSRYGICKF GANCKFDHPM AAPMGVYAYG FSTSASPASA 360 STNVPMARRL LGSASGSGYT S |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462868220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036907 | 0.0 | BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971057.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | K3XI36 | 0.0 | K3XI36_SETIT; Uncharacterized protein | ||||
STRING | Si001558m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-147 | zinc finger protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|