PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867698
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 257aa    MW: 28542.1 Da    PI: 5.0925
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867698genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.23.3e-55811851102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw+++   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+dflvdivp
  462867698  81 QLQQFWAERladIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVP 180
                89*****98888**************************************************************************************** PP

      NF-YC  98 rdelk 102
                rd++k
  462867698 181 RDDMK 185
                **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3448175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-3795167IPR009072Histone-fold
PfamPF008084.0E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEPSSQPQAA MGVAAGGSQA YPASAYPPSA TIAAAPAVAP AGSQPVPPFP GNPAQMSSQH  60
QLVYQQAQQF HQQLQQQQQR QLQQFWAERL ADIEQTTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVVF AKACEIFILE LTLRSWMHTE ENKRRTLQKN DIAAAITRTD IYDFLVDIVP  180
RDDMKEEGVG LPRAGMPPIG APSDAYPYYY MPQQQMPGAG MVYGGQQGHP VTYMWPEPQE  240
QHEQQAAEEQ RSLHESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-5892181695NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867698
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9391220.0KF939122.1 Cynodon dactylon nuclear factor Y subunit C (NF-YC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-134nuclear transcription factor Y subunit C-4
RefseqXP_025882178.11e-134nuclear transcription factor Y subunit C-4
SwissprotQ655V51e-135NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0H3U6T21e-145A0A0H3U6T2_CYNDA; Nuclear factor Y subunit C
STRINGOMERI06G22710.11e-135(Oryza meridionalis)
STRINGOBART06G24090.11e-135(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-66nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]