PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867659
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 359aa    MW: 38418.4 Da    PI: 8.6021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867659genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07190211223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C+ Cgk F+r  nL+ H+r H
  462867659 190 FCQVCGKGFKRDANLRMHMRAH 211
                6*******************99 PP
2zf-C2H211.90.00071277300123
                EEETTTT.EEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                y+C++C+ k+Fs  s+L++H + +
  462867659 277 YVCNNCNsKHFSVLSDLRTHEKHC 300
                9*******************9876 PP
3zf-C2H211.10.0013309324621
                TTEEESSHHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHir 21 
                Cg+sFsrk+ L+ H+ 
  462867659 309 CGTSFSRKDKLVGHLA 324
                **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.69E-6188213No hitNo description
PROSITE profilePS5015712.487189216IPR007087Zinc finger, C2H2
SMARTSM003550.0026189211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-6191237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355130239272IPR015880Zinc finger, C2H2-like
SMARTSM0035521277299IPR015880Zinc finger, C2H2-like
SMARTSM00355280305329IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MIRGGGGNTG YFLPSDQHQL FHALDGMDGG GAFMGAAVPS MSESGTPCHV LINNMSVLRD  60
KVQQLQPLIG IAISHGPLAA ASGVSAVIQD ITSAASSMNY ALQQLSHGLG PSSSSSITAA  120
APAVNGAADN GQQAAAVLTM EHVMQQWQHQ HGGYHDNNPV HITTEANEAS NNTMIIELDA  180
AELLAMYTHF CQVCGKGFKR DANLRMHMRA HGDEYKTSAA LANPACNGGS GSSTNKPYYS  240
CPEEGCRWNR KHAKFQPLKS VICAKNHYKR SHCPKMYVCN NCNSKHFSVL SDLRTHEKHC  300
GVQRWRCSCG TSFSRKDKLV GHLALFAAHG HQPAVPLDGT NIARNAKRAA SIGAAARYV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632904e-89AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045874e-89AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055444e-89AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149644e-89AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126164e-89CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683035.11e-126protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT249e-92STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1E5WL881e-134A0A1E5WL88_9POAL; Zinc finger protein STOP1-like protein
STRINGSi013894m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-89C2H2 family protein