PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867260
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 294aa    MW: 32081.8 Da    PI: 9.7317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867260genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014251273123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y C  Cgk+F  + + ++H +++
  462867260 251 YACRRCGKRFAVRGDWRTHEKNC 273
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-5221246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.67E-7231271No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5247271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MHPYHHHAAS VPSKQHGDDN DDDDQSLLRL SLWPPGNNHH HGSMAAAPPC SSGPSVISTT  60
TTTTSMPAAS SYPCWLNQQG HYNLVGSSSF LFHEHPEPDV SISLSIAPPR GNNAAACGGG  120
GFDGDAGRRG DEPAAAGSEP VLDPLRGGDP GRLHAVLLRR LQQDLQPLQQ HADAHVGPRL  180
AVPQGLRVPP RRDHGGGAAG VADARNNIDH PRARPLKDFR TLQTHYRRKH GARPYACRRC  240
GKRFAHGARP YACRRCGKRF AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS LKDH
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679763e-77EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956529.13e-63zinc finger protein WIP6
TrEMBLB6TKG77e-66B6TKG7_MAIZE; Zinc finger, C2H2 type family protein
STRINGSi030360m1e-62(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.13e-40C2H2-like zinc finger protein