PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867132
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 358aa    MW: 38993.4 Da    PI: 10.5377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867132genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31293351259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  462867132 293 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 351
                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-13248290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.8E-34280352IPR003657WRKY domain
PROSITE profilePS5081129.757287353IPR003657WRKY domain
SuperFamilySSF1182907.45E-27290351IPR003657WRKY domain
SMARTSM007742.5E-38292352IPR003657WRKY domain
PfamPF031067.6E-27294350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGMEEANRA AVQSCHRVLN LLSNPRGQLV PNKDLVAATG EAVSKFGSLT SKLANGNGRQ  60
GHARVRKVKK PLPIIDSNIF LESSAGEGSS KEPVRIPPQF PKRLLLENPV VDLEGPSQTP  120
IQLVQPVSVA PPAGTLHPAL PAAHLHFIQQ HQSYQRFQFM QQMKIQSEMM KRSNLGDQGQ  180
DGTNSAGGKG VNLKFDSSNC TASSSRSFLS SLSMEGSLAS LDGSRASRPF QLLSGSQTSS  240
TPELGGQRRR CTGKEDGSGR CATRCHCAKK RKLRIRRSIK VPAISNKVAD IPADEFSWRK  300
YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDDPSML IVTYEGDHNH NRVLAQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-192903511272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-68WRKY DNA-binding protein 74