PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866573
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 717aa    MW: 77903.7 Da    PI: 7.308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866573genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-056688123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C+k F r  nL+ H r H
  462866573 66 YICEVCHKGFQRDQNLQLHRRGH 88
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-66588No hitNo description
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035545107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MSHTSEEESL NNFQQQAKLE ACATGSSKAD TVMPVVKKRR GHPGNLDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EATCPHHEAS  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDNSRV NHTLATMVGS LHGQQQDIFS HGVPSFTASP TDVISNLSTN  240
DHNSDSHLRT LSPYALITRN TALFSNQISQ KDSGFPLDGS ASSFTYMSMN SPYMSATALL  300
QKAAEMGAKT SHDPISPLLL KSFPSNVTTP RDHMDISSGS QGDSLGNSAA NSVGIKTADD  360
DGSYMSGRGN ILINSPWASS CMRPTTIIGS IKYLSYTSSG NLTSIIKDSF ITHRAFCDAL  420
AEDNSRVNHT LATMVGSLHG QQQDIFSHGV PSFTASPTDV ISNLSTNDHN SDSHLRTLSP  480
YALITRNTAL FSNQISQKDS GFPLDGSASS FTYMSMNSPY MSATALLQKA AEMGAKTSHD  540
PISPLLLKSF PSNVTTPRDH MDISSGSQGD SLGNSAANSV GIKTADDDGS YMSGRGNILI  600
NSPWASSCMR PTTVPLIGLM NNPFVMRAEK ESPSIFSESQ TQHNRQGNIS GVGDAGLTQD  660
FLGLGGNGNL DISSETYNAD VTALSYSDEQ QKSQEHIYSY HQSSLDSAAL EKPIWES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33138200365Zinc finger protein JACKDAW
5b3h_F9e-33138200365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818794.10.0protein indeterminate-domain 2-like
TrEMBLA0A1E5VSU00.0A0A1E5VSU0_9POAL; Protein indeterminate-domain 2
STRINGPavir.Aa01904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2