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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462866511 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family |
C3H |
| Protein Properties |
Length: 416aa MW: 45665.1 Da PI: 7.843 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462866511 | genome | Tef | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 27.2 | 6.9e-09 | 128 | 150 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+e+C+++a G Ck+G Ck++H
462866511 128 QEECKYYATPGGCKFGKACKYIH 150
589******************** PP
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| 2 | zf-CCCH | 36.8 | 6.5e-12 | 175 | 199 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C++++rtG Cky +CkF+H+
462866511 175 GEKECPYYMRTGSCKYSTNCKFHHP 199
7899********************9 PP
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| 3 | zf-CCCH | 25.5 | 2.4e-08 | 367 | 392 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C ++ r+G CkyG++C F+H++
462866511 367 DQPVCTYYGRFGVCKYGPSCMFNHPF 392
6899********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.84 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0038 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.9E-6 | 129 | 150 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.19E-5 | 129 | 153 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 131 | 152 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.1E-6 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.802 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-9 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-6 | 176 | 200 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 179 | 198 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.911 | 319 | 347 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.015 | 319 | 346 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-5 | 323 | 349 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 365 | 392 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.267 | 365 | 393 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.23E-5 | 366 | 393 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-5 | 367 | 392 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MASWGLVLCG VVKGSGGSGS GSNSSSNKAS SPDDDQVPRE DYEGLTPDIS DSSGFDDKGS 60
ASNSVQGGDD KGSANTSENR RKTSYEIAAE PEKGSYFKKL DEANVTKHKV PKGAKDKRKE 120
TFGEGNAQEE CKYYATPGGC KFGKACKYIH REGKEGKVEA EKVDLNFLGL PLRPGEKECP 180
YYMRTGSCKY STNCKFHHPD PSNVSSKEPV KEHENADTPQ QNVQGPTQTT VPIWPDQRAM 240
NEQHVPFLAP AQPYSAGMMP PQGMYPSPDW SGYHQVPLNP YYPPGVPFQH FPAPVNHPMY 300
KPADLPGHQQ MPTDEYPERP GQPECQHFVR SGFCKYKMKC RYHHPRSRLP APLAGGLSPL 360
GLPIKPDQPV CTYYGRFGVC KYGPSCMFNH PFNYGPLPAA GPPLHGQYPT PANFTV
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