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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462866511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 416aa MW: 45665.1 Da PI: 7.843 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.9e-09 | 128 | 150 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C+++a G Ck+G Ck++H 462866511 128 QEECKYYATPGGCKFGKACKYIH 150 589******************** PP | |||||||
2 | zf-CCCH | 36.8 | 6.5e-12 | 175 | 199 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ 462866511 175 GEKECPYYMRTGSCKYSTNCKFHHP 199 7899********************9 PP | |||||||
3 | zf-CCCH | 25.5 | 2.4e-08 | 367 | 392 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG++C F+H++ 462866511 367 DQPVCTYYGRFGVCKYGPSCMFNHPF 392 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.84 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0038 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-6 | 129 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 129 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 131 | 152 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 176 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 179 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 319 | 347 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 319 | 346 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-5 | 323 | 349 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 365 | 392 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 365 | 393 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 366 | 393 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 367 | 392 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MASWGLVLCG VVKGSGGSGS GSNSSSNKAS SPDDDQVPRE DYEGLTPDIS DSSGFDDKGS 60 ASNSVQGGDD KGSANTSENR RKTSYEIAAE PEKGSYFKKL DEANVTKHKV PKGAKDKRKE 120 TFGEGNAQEE CKYYATPGGC KFGKACKYIH REGKEGKVEA EKVDLNFLGL PLRPGEKECP 180 YYMRTGSCKY STNCKFHHPD PSNVSSKEPV KEHENADTPQ QNVQGPTQTT VPIWPDQRAM 240 NEQHVPFLAP AQPYSAGMMP PQGMYPSPDW SGYHQVPLNP YYPPGVPFQH FPAPVNHPMY 300 KPADLPGHQQ MPTDEYPERP GQPECQHFVR SGFCKYKMKC RYHHPRSRLP APLAGGLSPL 360 GLPIKPDQPV CTYYGRFGVC KYGPSCMFNH PFNYGPLPAA GPPLHGQYPT PANFTV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462866511 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807655.1 | 0.0 | zinc finger CCCH domain-containing protein 65-like isoform X1 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A2T7EFS5 | 0.0 | A0A2T7EFS5_9POAL; Uncharacterized protein | ||||
STRING | Sb08g012360.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 8e-58 | C3H family protein |
Publications ? help Back to Top | |||
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