PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462865649

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 247aa MW: 27266.3 Da PI: 8.864

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462865649	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	179	224	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k s a++L +Ave+I+ Lq 462865649 179 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVEHIRGLQ 224 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.373	173	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-15	176	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-12	177	228	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-14	178	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	179	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-13	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MHRYHQFGVE GTNHQDGGGT LPRHSSSPPG FFSSPVVDNG FPSARVGGGN EVHQTMSSYN 60 KKMKSPMNLP RQGTLTQISQ DTTEHMHAVG PSEENITTSN VVRSFSGGFS IGSWEDSNSI 120 AFSSPSSKAG IHNNDDIIAT LSNYELQFGV TKEANLQMQQ DQVPFRVRAK RGCATHPRSI 180 AERERRTRIS EKLRKLQALV PNMDKQTSTA DMLDLAVEHI RGLQSELQAL KEDKEKCTCR 240 GNHSSRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462865649

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448088.2	1e-128	transcription factor bHLH129 isoform X2
TrEMBL	A0A2S3I7V0	1e-126	A0A2S3I7V0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CWM6	1e-126	A0A2T7CWM6_9POAL; Uncharacterized protein
STRING	Pavir.Gb01377.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14188	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-42	bHLH family protein